Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10035

Experiment: 30_an_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_2
2,147,957	+		AMB_RS10025	0.57	-1.4
2,147,957	+		AMB_RS10025	0.57	-0.3
2,147,957	+		AMB_RS10025	0.57	-0.7
2,148,112	+		AMB_RS10025	0.75	+0.7
2,148,113	-		AMB_RS10025	0.75	+1.0
2,148,140	+		AMB_RS10025	0.78	-0.7
2,148,145	+		AMB_RS10025	0.79	-1.0
2,148,146	-		AMB_RS10025	0.79	+0.2
2,148,155	-		AMB_RS10025	0.80	+0.2
2,148,201	+		AMB_RS10025	0.85	-0.7
2,148,202	-		AMB_RS10025	0.85	-0.3
2,148,254	+				-0.5
2,148,357	-				-2.8
2,148,360	+				-1.9
2,148,360	+				-1.6
2,148,360	+				+0.2
2,148,360	+				-0.6
2,148,360	+				-1.3
2,148,360	+				-0.9
2,148,362	+				-0.9
2,148,417	-		AMB_RS10030	0.13	+0.3
2,148,466	-		AMB_RS10030	0.25	-0.5
2,148,504	-		AMB_RS10030	0.34	+0.5
2,148,571	-		AMB_RS10030	0.50	+0.4
2,148,639	+		AMB_RS10030	0.67	+0.6
2,148,639	+		AMB_RS10030	0.67	+0.3
2,148,639	+		AMB_RS10030	0.67	+1.7
2,148,639	+		AMB_RS10030	0.67	-1.2
2,148,682	+		AMB_RS10030	0.77	+1.4
2,148,682	+		AMB_RS10030	0.77	+0.4
2,148,682	+		AMB_RS10030	0.77	+0.2
2,148,682	+		AMB_RS10030	0.77	-1.7
2,148,683	-		AMB_RS10030	0.77	-0.9
2,148,684	+		AMB_RS10030	0.78	+0.4
2,148,684	+		AMB_RS10030	0.78	+0.4
2,148,684	+		AMB_RS10030	0.78	+0.3
2,148,684	+		AMB_RS10030	0.78	-2.3
2,148,684	+		AMB_RS10030	0.78	+0.1
2,148,685	-		AMB_RS10030	0.78	+0.4
2,148,685	-		AMB_RS10030	0.78	+0.2
2,148,685	-		AMB_RS10030	0.78	-2.0
2,148,685	-		AMB_RS10030	0.78	+1.0
2,148,693	-		AMB_RS10030	0.80	-1.2
2,148,723	+		AMB_RS10030	0.87	-1.6
2,148,749	+				-2.0
2,148,749	+				-0.6
2,148,750	-				+0.1
2,148,767	+				-0.9
2,148,768	-				+0.6
2,148,946	-				-0.9
2,149,123	-				-0.3
2,149,123	-				-2.0
2,149,263	+				+0.2
2,149,315	-		AMB_RS10035	0.10	+0.6
2,149,383	+		AMB_RS10035	0.12	-3.1
2,149,383	+		AMB_RS10035	0.12	-0.9
2,149,383	+		AMB_RS10035	0.12	-0.2
2,149,383	+		AMB_RS10035	0.12	+0.1
2,149,383	+		AMB_RS10035	0.12	+1.1
2,149,383	+		AMB_RS10035	0.12	-0.4
2,149,383	+		AMB_RS10035	0.12	-0.3
2,149,384	-		AMB_RS10035	0.12	+0.5
2,149,384	-		AMB_RS10035	0.12	-0.3
2,149,384	-		AMB_RS10035	0.12	-1.2
2,149,384	-		AMB_RS10035	0.12	-2.3
2,149,384	-		AMB_RS10035	0.12	-0.2
2,149,396	-		AMB_RS10035	0.13	-0.7
2,149,509	+		AMB_RS10035	0.16	-0.1
2,149,509	+		AMB_RS10035	0.16	-0.1
2,149,509	+		AMB_RS10035	0.16	-0.1
2,149,510	-		AMB_RS10035	0.16	+0.3
2,149,578	+		AMB_RS10035	0.18	+0.2
2,149,590	+		AMB_RS10035	0.18	-1.1
2,149,591	-		AMB_RS10035	0.18	-0.2
2,149,591	-		AMB_RS10035	0.18	+0.1
2,149,638	+		AMB_RS10035	0.19	-0.1
2,149,639	-		AMB_RS10035	0.19	-0.4
2,149,893	-		AMB_RS10035	0.26	-0.4
2,149,965	+		AMB_RS10035	0.29	-1.1
2,149,965	+		AMB_RS10035	0.29	-0.9
2,149,965	+		AMB_RS10035	0.29	-0.2
2,149,966	-		AMB_RS10035	0.29	-1.4
2,149,966	-		AMB_RS10035	0.29	-0.5
2,150,036	-		AMB_RS10035	0.30	-0.2
2,150,036	-		AMB_RS10035	0.30	+0.3
2,150,036	-		AMB_RS10035	0.30	+0.4
2,150,036	-		AMB_RS10035	0.30	-1.6
2,150,037	+		AMB_RS10035	0.31	+0.3
2,150,037	+		AMB_RS10035	0.31	-1.9
2,150,037	+		AMB_RS10035	0.31	+0.2
2,150,037	+		AMB_RS10035	0.31	+0.2
2,150,038	-		AMB_RS10035	0.31	-0.2
2,150,310	+		AMB_RS10035	0.38	+1.4
2,150,310	+		AMB_RS10035	0.38	-1.4
2,150,310	+		AMB_RS10035	0.38	-1.9
2,150,310	+		AMB_RS10035	0.38	-0.9
2,150,311	-		AMB_RS10035	0.38	-0.4
2,150,311	-		AMB_RS10035	0.38	-2.4
2,150,748	+		AMB_RS10035	0.50	-1.7
2,150,748	+		AMB_RS10035	0.50	-1.2
2,150,748	+		AMB_RS10035	0.50	-0.1
2,150,749	-		AMB_RS10035	0.50	-0.2
2,150,749	-		AMB_RS10035	0.50	-0.2
2,151,009	+		AMB_RS10035	0.58	+0.5
2,151,010	-		AMB_RS10035	0.58	-0.5
2,151,010	-		AMB_RS10035	0.58	-1.4
2,151,010	-		AMB_RS10035	0.58	-1.4
2,151,024	+		AMB_RS10035	0.58	+0.3
2,151,024	+		AMB_RS10035	0.58	+0.0
2,151,025	-		AMB_RS10035	0.58	-2.6
2,151,025	-		AMB_RS10035	0.58	+0.1
2,151,025	-		AMB_RS10035	0.58	-1.4
2,151,025	-		AMB_RS10035	0.58	-0.4
2,151,025	-		AMB_RS10035	0.58	-0.3
2,151,029	-		AMB_RS10035	0.58	-1.3
2,151,029	-		AMB_RS10035	0.58	+0.1
2,151,081	+		AMB_RS10035	0.60	-1.8
2,151,082	-		AMB_RS10035	0.60	-2.0
2,151,082	-		AMB_RS10035	0.60	-0.1
2,151,162	+		AMB_RS10035	0.62	+0.4
2,151,429	+		AMB_RS10035	0.69	+0.4
2,151,430	-		AMB_RS10035	0.69	-0.1
2,151,517	-		AMB_RS10035	0.72	-0.3
2,151,750	+		AMB_RS10035	0.78	+0.4
2,151,751	-		AMB_RS10035	0.78	+0.6
2,151,765	+		AMB_RS10035	0.79	-0.2
2,151,765	+		AMB_RS10035	0.79	-0.6
2,151,766	-		AMB_RS10035	0.79	-0.5
2,151,766	-		AMB_RS10035	0.79	-0.0
2,151,789	+		AMB_RS10035	0.79	-2.5
2,151,789	+		AMB_RS10035	0.79	+1.3
2,151,790	-		AMB_RS10035	0.79	+0.6
2,151,790	-		AMB_RS10035	0.79	+0.6
2,151,790	-		AMB_RS10035	0.79	-1.8
2,151,831	+		AMB_RS10035	0.81	-0.0
2,151,831	+		AMB_RS10035	0.81	+0.4
2,152,245	+				+1.0
2,152,245	+				+0.2
2,152,245	+				-0.4
2,152,245	+				-0.8
2,152,245	+				-0.9
2,152,246	-				-2.3
2,152,246	-				+0.2
2,152,246	-				-0.9
2,152,246	-				-1.1
2,152,246	-				+0.5
2,152,249	+				-1.4
2,152,249	+				+0.6
2,152,249	+				+1.1
2,152,249	+				+1.0
2,152,250	-				-0.3
2,152,250	-				-1.7
2,152,385	+				-2.2
2,152,385	+				-0.2
2,152,456	-				+0.4
2,152,562	+				-1.6
2,152,562	+				-0.9
2,152,637	-				-1.6
2,152,741	+				-1.0
2,152,741	+				+0.4
2,152,742	-				-1.4
2,152,808	+				-1.9
2,152,808	+				-0.6
2,152,808	+				-0.5
2,152,809	-				+0.2
2,152,878	-		AMB_RS10040	0.24	+0.1
2,152,995	+		AMB_RS10040	0.53	-0.6
2,152,995	+		AMB_RS10040	0.53	+0.4
2,152,996	-		AMB_RS10040	0.53	+0.6
2,152,996	-		AMB_RS10040	0.53	+0.8
2,153,043	+		AMB_RS10040	0.64	+0.2
2,153,043	+		AMB_RS10040	0.64	-2.7
2,153,043	+		AMB_RS10040	0.64	-1.7
2,153,043	+		AMB_RS10040	0.64	+0.2
2,153,061	+		AMB_RS10040	0.69	+1.0
2,153,061	+		AMB_RS10040	0.69	-0.2
2,153,061	+		AMB_RS10040	0.69	+0.1
2,153,062	-		AMB_RS10040	0.69	+0.7
2,153,062	-		AMB_RS10040	0.69	-0.2
2,153,104	+		AMB_RS10040	0.79	-1.0
2,153,151	+				+1.0
2,153,152	-				-1.4
2,153,152	-				-1.4
2,153,187	+				-1.2
2,153,187	+				-1.2
2,153,187	+				+0.2
2,153,187	+				+0.3
2,153,188	-				+0.0
2,153,188	-				+0.4
2,153,188	-				-0.9
2,153,188	-				-0.3
2,153,188	-				-0.9
2,153,188	-				-1.7
2,153,188	-				-3.0
2,153,188	-				+0.3
2,153,419	+				-0.2
2,153,419	+				+0.0
2,153,419	+				-1.9
2,153,420	-				-0.6
2,153,432	-				+0.4
2,153,489	-				-0.3