Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09370

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09365 and AMB_RS09370 are separated by 180 nucleotidesAMB_RS09370 and AMB_RS09375 overlap by 41 nucleotidesAMB_RS09375 and AMB_RS09380 are separated by 1 nucleotides AMB_RS09365: AMB_RS09365 - serine O-acetyltransferase, at 1,993,822 to 1,994,709 _RS09365 AMB_RS09370: AMB_RS09370 - EAL domain-containing protein, at 1,994,890 to 1,995,783 _RS09370 AMB_RS09375: AMB_RS09375 - nitrate ABC transporter substrate-binding proteins, at 1,995,743 to 1,996,660 _RS09375 AMB_RS09380: AMB_RS09380 - ABC transporter permease, at 1,996,662 to 1,997,432 _RS09380 Position (kb) 1994 1995 1996Strain fitness (log2 ratio) -2 -1 0 1at 1993.914 kb on + strand, within AMB_RS09365at 1994.249 kb on + strand, within AMB_RS09365at 1994.250 kb on - strand, within AMB_RS09365at 1994.331 kb on - strand, within AMB_RS09365at 1994.331 kb on - strand, within AMB_RS09365at 1995.160 kb on - strand, within AMB_RS09370at 1995.259 kb on + strand, within AMB_RS09370at 1995.427 kb on + strand, within AMB_RS09370at 1995.427 kb on + strand, within AMB_RS09370at 1995.694 kb on + strandat 1995.695 kb on - strandat 1995.695 kb on - strandat 1995.695 kb on - strandat 1995.695 kb on - strandat 1995.700 kb on + strandat 1995.858 kb on + strand, within AMB_RS09375at 1995.858 kb on + strand, within AMB_RS09375at 1995.859 kb on - strand, within AMB_RS09375at 1995.859 kb on - strand, within AMB_RS09375at 1995.859 kb on - strand, within AMB_RS09375at 1995.859 kb on - strand, within AMB_RS09375at 1995.861 kb on + strand, within AMB_RS09375at 1995.975 kb on + strand, within AMB_RS09375at 1995.975 kb on + strand, within AMB_RS09375at 1995.976 kb on - strand, within AMB_RS09375at 1995.976 kb on - strand, within AMB_RS09375at 1995.976 kb on - strand, within AMB_RS09375at 1995.976 kb on - strand, within AMB_RS09375at 1996.039 kb on - strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.062 kb on + strand, within AMB_RS09375at 1996.063 kb on - strand, within AMB_RS09375at 1996.063 kb on - strand, within AMB_RS09375at 1996.280 kb on + strand, within AMB_RS09375at 1996.351 kb on - strand, within AMB_RS09375at 1996.351 kb on - strand, within AMB_RS09375at 1996.500 kb on + strand, within AMB_RS09375at 1996.500 kb on + strand, within AMB_RS09375at 1996.500 kb on + strand, within AMB_RS09375at 1996.500 kb on + strand, within AMB_RS09375at 1996.501 kb on - strand, within AMB_RS09375at 1996.501 kb on - strand, within AMB_RS09375at 1996.501 kb on - strand, within AMB_RS09375at 1996.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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1,993,914 + AMB_RS09365 0.10 -1.3
1,994,249 + AMB_RS09365 0.48 +0.5
1,994,250 - AMB_RS09365 0.48 -0.0
1,994,331 - AMB_RS09365 0.57 -1.8
1,994,331 - AMB_RS09365 0.57 -0.5
1,995,160 - AMB_RS09370 0.30 +0.3
1,995,259 + AMB_RS09370 0.41 -2.3
1,995,427 + AMB_RS09370 0.60 +0.4
1,995,427 + AMB_RS09370 0.60 -1.1
1,995,694 + +0.7
1,995,695 - -1.7
1,995,695 - -0.2
1,995,695 - -1.1
1,995,695 - -0.6
1,995,700 + -0.1
1,995,858 + AMB_RS09375 0.13 -1.2
1,995,858 + AMB_RS09375 0.13 +0.3
1,995,859 - AMB_RS09375 0.13 -2.4
1,995,859 - AMB_RS09375 0.13 -1.5
1,995,859 - AMB_RS09375 0.13 +0.5
1,995,859 - AMB_RS09375 0.13 -0.5
1,995,861 + AMB_RS09375 0.13 -1.5
1,995,975 + AMB_RS09375 0.25 -0.2
1,995,975 + AMB_RS09375 0.25 +0.1
1,995,976 - AMB_RS09375 0.25 +0.1
1,995,976 - AMB_RS09375 0.25 +0.1
1,995,976 - AMB_RS09375 0.25 +0.5
1,995,976 - AMB_RS09375 0.25 -1.1
1,996,039 - AMB_RS09375 0.32 -1.3
1,996,062 + AMB_RS09375 0.35 -1.1
1,996,062 + AMB_RS09375 0.35 +0.7
1,996,062 + AMB_RS09375 0.35 -0.1
1,996,062 + AMB_RS09375 0.35 -0.3
1,996,062 + AMB_RS09375 0.35 -1.5
1,996,062 + AMB_RS09375 0.35 +0.0
1,996,062 + AMB_RS09375 0.35 +0.2
1,996,063 - AMB_RS09375 0.35 -0.6
1,996,063 - AMB_RS09375 0.35 -0.1
1,996,280 + AMB_RS09375 0.58 -0.6
1,996,351 - AMB_RS09375 0.66 -0.8
1,996,351 - AMB_RS09375 0.66 -0.0
1,996,500 + AMB_RS09375 0.82 -2.0
1,996,500 + AMB_RS09375 0.82 +0.2
1,996,500 + AMB_RS09375 0.82 -0.8
1,996,500 + AMB_RS09375 0.82 -0.5
1,996,501 - AMB_RS09375 0.83 -0.7
1,996,501 - AMB_RS09375 0.83 -0.8
1,996,501 - AMB_RS09375 0.83 +0.0
1,996,582 - +0.2

Or see this region's nucleotide sequence