Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09030

Experiment: 30_an_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_2
1,921,282	+		AMB_RS09020	0.55	+0.1
1,921,282	+		AMB_RS09020	0.55	-1.5
1,921,282	+		AMB_RS09020	0.55	+0.2
1,921,283	-		AMB_RS09020	0.55	-1.1
1,921,284	+		AMB_RS09020	0.55	-0.1
1,921,285	-		AMB_RS09020	0.55	-0.3
1,921,373	-		AMB_RS09020	0.61	+0.3
1,921,373	-		AMB_RS09020	0.61	-2.4
1,921,373	-		AMB_RS09020	0.61	-0.7
1,921,373	-		AMB_RS09020	0.61	+0.2
1,921,374	+		AMB_RS09020	0.61	+0.2
1,921,374	+		AMB_RS09020	0.61	-1.3
1,921,374	+		AMB_RS09020	0.61	-1.3
1,921,377	+		AMB_RS09020	0.61	-0.4
1,921,377	+		AMB_RS09020	0.61	-0.7
1,921,378	-		AMB_RS09020	0.61	-0.4
1,921,389	+		AMB_RS09020	0.62	-0.5
1,921,402	+		AMB_RS09020	0.63	-0.5
1,921,402	+		AMB_RS09020	0.63	-1.3
1,921,402	+		AMB_RS09020	0.63	-2.1
1,921,410	-		AMB_RS09020	0.63	-1.1
1,921,434	+		AMB_RS09020	0.65	+0.5
1,921,474	+		AMB_RS09020	0.67	+1.5
1,921,474	+		AMB_RS09020	0.67	+0.7
1,921,474	+		AMB_RS09020	0.67	-1.7
1,921,474	+		AMB_RS09020	0.67	-0.5
1,921,474	+		AMB_RS09020	0.67	-0.8
1,921,474	+		AMB_RS09020	0.67	-1.1
1,921,474	+		AMB_RS09020	0.67	-1.3
1,921,475	-		AMB_RS09020	0.67	-1.5
1,921,475	-		AMB_RS09020	0.67	-0.6
1,921,475	-		AMB_RS09020	0.67	-0.3
1,921,475	-		AMB_RS09020	0.67	-0.5
1,921,475	-		AMB_RS09020	0.67	+0.8
1,921,475	-		AMB_RS09020	0.67	-0.6
1,921,475	-		AMB_RS09020	0.67	-1.5
1,921,475	-		AMB_RS09020	0.67	+0.3
1,921,501	+		AMB_RS09020	0.69	-1.1
1,921,501	+		AMB_RS09020	0.69	+0.1
1,921,501	+		AMB_RS09020	0.69	+0.3
1,921,501	+		AMB_RS09020	0.69	-0.1
1,921,502	-		AMB_RS09020	0.69	-0.2
1,921,502	-		AMB_RS09020	0.69	-0.8
1,921,502	-		AMB_RS09020	0.69	-1.8
1,921,502	-		AMB_RS09020	0.69	+0.6
1,921,502	-		AMB_RS09020	0.69	+1.5
1,921,537	-		AMB_RS09020	0.71	-0.8
1,921,561	+		AMB_RS09020	0.73	-0.8
1,921,561	+		AMB_RS09020	0.73	-2.3
1,921,633	+		AMB_RS09020	0.78	-0.1
1,921,633	+		AMB_RS09020	0.78	-0.1
1,921,633	+		AMB_RS09020	0.78	-0.2
1,921,634	-		AMB_RS09020	0.78	+0.4
1,921,634	-		AMB_RS09020	0.78	+0.5
1,921,699	+		AMB_RS09020	0.82	-0.8
1,921,700	-		AMB_RS09020	0.82	+0.1
1,921,700	-		AMB_RS09020	0.82	+0.0
1,921,700	-		AMB_RS09020	0.82	-0.1
1,921,700	-		AMB_RS09020	0.82	+0.5
1,921,711	+		AMB_RS09020	0.83	+0.2
1,921,711	+		AMB_RS09020	0.83	-0.5
1,921,711	+		AMB_RS09020	0.83	-0.3
1,921,712	-		AMB_RS09020	0.83	+0.5
1,921,712	-		AMB_RS09020	0.83	-1.3
1,921,712	-		AMB_RS09020	0.83	-0.1
1,921,720	+		AMB_RS09020	0.83	-0.5
1,921,790	+		AMB_RS09020	0.88	+1.1
1,921,791	-		AMB_RS09020	0.88	+0.2
1,921,846	+				-1.1
1,921,846	+				+0.5
1,921,847	-				-2.0
1,921,847	-				-0.0
1,921,853	+				-0.0
1,921,853	+				+0.0
1,921,854	-				-1.8
1,921,854	-				-0.6
1,921,960	+				-0.7
1,921,961	-				-0.8
1,921,961	-				-1.0
1,921,970	-				+0.5
1,921,970	-				-0.1
1,922,022	+		AMB_RS09025	0.18	-1.7
1,922,022	+		AMB_RS09025	0.18	+0.3
1,922,023	-		AMB_RS09025	0.19	+0.1
1,922,144	+		AMB_RS09025	0.68	-2.0
1,922,144	+		AMB_RS09025	0.68	+0.4
1,922,144	+		AMB_RS09025	0.68	+0.5
1,922,145	-		AMB_RS09025	0.68	-0.2
1,922,145	-		AMB_RS09025	0.68	-2.1
1,922,145	-		AMB_RS09025	0.68	+1.2
1,922,539	+		AMB_RS09030	0.27	-1.1
1,922,587	-		AMB_RS09030	0.31	-0.1
1,922,587	-		AMB_RS09030	0.31	-2.4
1,922,587	-		AMB_RS09030	0.31	+0.0
1,922,621	+		AMB_RS09030	0.34	-0.1
1,922,621	+		AMB_RS09030	0.34	-0.1
1,922,621	+		AMB_RS09030	0.34	+0.5
1,922,621	+		AMB_RS09030	0.34	+0.7
1,922,622	-		AMB_RS09030	0.34	+0.6
1,922,622	-		AMB_RS09030	0.34	-0.1
1,922,622	-		AMB_RS09030	0.34	-1.3
1,922,624	-		AMB_RS09030	0.35	+0.0
1,922,805	+		AMB_RS09030	0.51	-0.8
1,922,806	-		AMB_RS09030	0.51	-0.1
1,922,895	+		AMB_RS09030	0.59	+0.7
1,922,895	+		AMB_RS09030	0.59	+0.3
1,922,896	-		AMB_RS09030	0.59	-1.5
1,922,896	-		AMB_RS09030	0.59	-2.0
1,922,896	-		AMB_RS09030	0.59	-1.3
1,922,913	+		AMB_RS09030	0.60	-0.4
1,922,914	-		AMB_RS09030	0.61	-2.2
1,923,108	+		AMB_RS09030	0.78	-1.8
1,923,108	+		AMB_RS09030	0.78	-1.3
1,923,109	-		AMB_RS09030	0.78	-2.1
1,923,126	+		AMB_RS09030	0.80	-0.5
1,923,126	+		AMB_RS09030	0.80	-2.5
1,923,127	-		AMB_RS09030	0.80	-1.3
1,923,127	-		AMB_RS09030	0.80	-0.2
1,923,127	-		AMB_RS09030	0.80	-0.4
1,923,127	-		AMB_RS09030	0.80	-1.3
1,923,127	-		AMB_RS09030	0.80	-0.1
1,923,129	+		AMB_RS09030	0.80	-0.6
1,923,129	+		AMB_RS09030	0.80	-2.3
1,923,129	+		AMB_RS09030	0.80	-1.3
1,923,130	-		AMB_RS09030	0.80	-0.2
1,923,130	-		AMB_RS09030	0.80	-2.1
1,923,130	-		AMB_RS09030	0.80	-1.5
1,923,130	-		AMB_RS09030	0.80	-2.3
1,923,130	-		AMB_RS09030	0.80	-0.5
1,923,130	-		AMB_RS09030	0.80	-0.8
1,923,279	+				-0.4
1,923,279	+				+0.5
1,923,279	+				-1.1
1,923,279	+				+0.1
1,923,280	-				-0.1
1,923,280	-				-0.1
1,923,280	-				-1.8
1,923,351	+				+1.5
1,923,352	-				-1.1
1,923,352	-				-0.5
1,923,352	-				-0.4
1,923,399	+				+0.5
1,923,591	-		AMB_RS09035	0.52	-0.5
1,923,598	+		AMB_RS09035	0.54	+0.7
1,923,709	+		AMB_RS09035	0.80	-0.1
1,923,709	+		AMB_RS09035	0.80	-0.1
1,923,710	-		AMB_RS09035	0.80	-1.7
1,923,830	+				-0.5
1,923,872	+				-0.1
1,923,872	+				+0.4
1,923,872	+				-1.1
1,923,873	-				+0.5
1,923,873	-				+0.3
1,923,873	-				+0.5
1,923,925	-		AMB_RS09040	0.18	-0.1
1,924,020	+		AMB_RS09040	0.40	+0.6
1,924,021	-		AMB_RS09040	0.41	-0.8
1,924,086	+		AMB_RS09040	0.56	-1.1
1,924,087	-		AMB_RS09040	0.56	+1.5
1,924,088	+		AMB_RS09040	0.57	-0.2
1,924,089	-		AMB_RS09040	0.57	-0.4
1,924,179	+		AMB_RS09040	0.78	-1.1
1,924,180	-		AMB_RS09040	0.78	-1.1