Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08380

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08375 and AMB_RS08380 are separated by 39 nucleotidesAMB_RS08380 and AMB_RS08385 are separated by 72 nucleotides AMB_RS08375: AMB_RS08375 - hypothetical protein, at 1,792,966 to 1,794,348 _RS08375 AMB_RS08380: AMB_RS08380 - sigma-54-dependent Fis family transcriptional regulator, at 1,794,388 to 1,795,725 _RS08380 AMB_RS08385: AMB_RS08385 - sensor histidine kinase, at 1,795,798 to 1,797,618 _RS08385 Position (kb) 1794 1795 1796Strain fitness (log2 ratio) -3 -2 -1 0 1at 1793.407 kb on + strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.494 kb on + strand, within AMB_RS08375at 1793.494 kb on + strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.623 kb on + strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.624 kb on - strand, within AMB_RS08375at 1793.625 kb on + strand, within AMB_RS08375at 1793.626 kb on - strand, within AMB_RS08375at 1793.671 kb on + strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.672 kb on - strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.883 kb on + strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.884 kb on - strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.887 kb on + strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.888 kb on - strand, within AMB_RS08375at 1793.971 kb on + strand, within AMB_RS08375at 1793.971 kb on + strand, within AMB_RS08375at 1793.972 kb on - strand, within AMB_RS08375at 1793.972 kb on - strand, within AMB_RS08375at 1793.973 kb on + strand, within AMB_RS08375at 1793.973 kb on + strand, within AMB_RS08375at 1793.974 kb on - strand, within AMB_RS08375at 1794.157 kb on + strand, within AMB_RS08375at 1794.158 kb on - strand, within AMB_RS08375at 1794.158 kb on - strand, within AMB_RS08375at 1794.310 kb on + strandat 1794.311 kb on - strandat 1794.311 kb on - strandat 1794.337 kb on - strandat 1794.340 kb on - strandat 1794.419 kb on + strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.420 kb on - strandat 1794.821 kb on + strand, within AMB_RS08380at 1794.821 kb on + strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1794.822 kb on - strand, within AMB_RS08380at 1795.430 kb on + strand, within AMB_RS08380at 1795.468 kb on - strand, within AMB_RS08380at 1795.966 kb on + strandat 1795.966 kb on + strandat 1795.967 kb on - strandat 1796.006 kb on - strand, within AMB_RS08385at 1796.131 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.191 kb on + strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.192 kb on - strand, within AMB_RS08385at 1796.206 kb on + strand, within AMB_RS08385at 1796.206 kb on + strand, within AMB_RS08385at 1796.206 kb on + strand, within AMB_RS08385at 1796.207 kb on - strand, within AMB_RS08385at 1796.207 kb on - strand, within AMB_RS08385at 1796.222 kb on - strand, within AMB_RS08385at 1796.294 kb on - strand, within AMB_RS08385at 1796.462 kb on - strand, within AMB_RS08385at 1796.462 kb on - strand, within AMB_RS08385at 1796.522 kb on - strand, within AMB_RS08385at 1796.522 kb on - strand, within AMB_RS08385at 1796.660 kb on - strand, within AMB_RS08385at 1796.660 kb on - strand, within AMB_RS08385at 1796.660 kb on - strand, within AMB_RS08385

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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1,793,407 + AMB_RS08375 0.32 -1.8
1,793,407 + AMB_RS08375 0.32 -0.8
1,793,407 + AMB_RS08375 0.32 +0.4
1,793,408 - AMB_RS08375 0.32 -0.1
1,793,408 - AMB_RS08375 0.32 +0.2
1,793,408 - AMB_RS08375 0.32 -1.8
1,793,408 - AMB_RS08375 0.32 -1.3
1,793,408 - AMB_RS08375 0.32 -0.5
1,793,461 + AMB_RS08375 0.36 +0.1
1,793,461 + AMB_RS08375 0.36 +0.6
1,793,461 + AMB_RS08375 0.36 -0.3
1,793,494 + AMB_RS08375 0.38 +0.3
1,793,494 + AMB_RS08375 0.38 +0.3
1,793,495 - AMB_RS08375 0.38 +0.6
1,793,495 - AMB_RS08375 0.38 +0.5
1,793,495 - AMB_RS08375 0.38 -1.3
1,793,495 - AMB_RS08375 0.38 +0.2
1,793,623 + AMB_RS08375 0.48 -0.1
1,793,623 + AMB_RS08375 0.48 -0.4
1,793,623 + AMB_RS08375 0.48 -1.0
1,793,623 + AMB_RS08375 0.48 -0.8
1,793,623 + AMB_RS08375 0.48 -0.3
1,793,623 + AMB_RS08375 0.48 +0.5
1,793,623 + AMB_RS08375 0.48 -0.5
1,793,623 + AMB_RS08375 0.48 -2.0
1,793,623 + AMB_RS08375 0.48 -1.5
1,793,623 + AMB_RS08375 0.48 +0.4
1,793,623 + AMB_RS08375 0.48 +0.5
1,793,623 + AMB_RS08375 0.48 +0.1
1,793,624 - AMB_RS08375 0.48 -1.8
1,793,624 - AMB_RS08375 0.48 -1.7
1,793,624 - AMB_RS08375 0.48 +1.0
1,793,624 - AMB_RS08375 0.48 +0.2
1,793,624 - AMB_RS08375 0.48 +0.3
1,793,624 - AMB_RS08375 0.48 +0.4
1,793,624 - AMB_RS08375 0.48 +1.5
1,793,624 - AMB_RS08375 0.48 +0.4
1,793,624 - AMB_RS08375 0.48 -1.5
1,793,624 - AMB_RS08375 0.48 -0.3
1,793,624 - AMB_RS08375 0.48 +0.2
1,793,624 - AMB_RS08375 0.48 -0.5
1,793,625 + AMB_RS08375 0.48 -2.1
1,793,626 - AMB_RS08375 0.48 -0.5
1,793,671 + AMB_RS08375 0.51 -0.9
1,793,672 - AMB_RS08375 0.51 -2.8
1,793,672 - AMB_RS08375 0.51 -1.1
1,793,672 - AMB_RS08375 0.51 +0.3
1,793,672 - AMB_RS08375 0.51 -0.8
1,793,672 - AMB_RS08375 0.51 -0.0
1,793,883 + AMB_RS08375 0.66 -0.3
1,793,883 + AMB_RS08375 0.66 +1.5
1,793,883 + AMB_RS08375 0.66 -2.1
1,793,883 + AMB_RS08375 0.66 +0.2
1,793,884 - AMB_RS08375 0.66 +0.4
1,793,884 - AMB_RS08375 0.66 +0.2
1,793,884 - AMB_RS08375 0.66 +0.3
1,793,884 - AMB_RS08375 0.66 +1.1
1,793,884 - AMB_RS08375 0.66 -1.1
1,793,887 + AMB_RS08375 0.67 -2.0
1,793,887 + AMB_RS08375 0.67 -0.1
1,793,887 + AMB_RS08375 0.67 -0.4
1,793,887 + AMB_RS08375 0.67 -0.4
1,793,887 + AMB_RS08375 0.67 +0.3
1,793,887 + AMB_RS08375 0.67 -2.4
1,793,888 - AMB_RS08375 0.67 +0.0
1,793,888 - AMB_RS08375 0.67 +0.3
1,793,888 - AMB_RS08375 0.67 -1.5
1,793,888 - AMB_RS08375 0.67 +1.5
1,793,888 - AMB_RS08375 0.67 -0.8
1,793,971 + AMB_RS08375 0.73 +0.0
1,793,971 + AMB_RS08375 0.73 +0.1
1,793,972 - AMB_RS08375 0.73 -0.5
1,793,972 - AMB_RS08375 0.73 +0.1
1,793,973 + AMB_RS08375 0.73 -0.6
1,793,973 + AMB_RS08375 0.73 +1.5
1,793,974 - AMB_RS08375 0.73 -0.5
1,794,157 + AMB_RS08375 0.86 +0.3
1,794,158 - AMB_RS08375 0.86 +0.6
1,794,158 - AMB_RS08375 0.86 +0.5
1,794,310 + -2.8
1,794,311 - -0.8
1,794,311 - +0.1
1,794,337 - -0.2
1,794,340 - -0.1
1,794,419 + -1.8
1,794,420 - -1.5
1,794,420 - -0.2
1,794,420 - -0.7
1,794,420 - -1.8
1,794,420 - +0.0
1,794,821 + AMB_RS08380 0.32 -0.1
1,794,821 + AMB_RS08380 0.32 +0.1
1,794,822 - AMB_RS08380 0.32 -2.3
1,794,822 - AMB_RS08380 0.32 +0.1
1,794,822 - AMB_RS08380 0.32 -0.2
1,794,822 - AMB_RS08380 0.32 +1.5
1,795,430 + AMB_RS08380 0.78 +0.6
1,795,468 - AMB_RS08380 0.81 -0.5
1,795,966 + +0.5
1,795,966 + -0.3
1,795,967 - +0.8
1,796,006 - AMB_RS08385 0.11 -1.3
1,796,131 + AMB_RS08385 0.18 -0.2
1,796,191 + AMB_RS08385 0.22 +0.2
1,796,191 + AMB_RS08385 0.22 -0.0
1,796,191 + AMB_RS08385 0.22 -1.4
1,796,191 + AMB_RS08385 0.22 +0.6
1,796,191 + AMB_RS08385 0.22 -0.8
1,796,191 + AMB_RS08385 0.22 -2.5
1,796,191 + AMB_RS08385 0.22 -1.3
1,796,191 + AMB_RS08385 0.22 -0.3
1,796,191 + AMB_RS08385 0.22 +0.6
1,796,191 + AMB_RS08385 0.22 -1.4
1,796,191 + AMB_RS08385 0.22 -0.1
1,796,191 + AMB_RS08385 0.22 +0.6
1,796,192 - AMB_RS08385 0.22 +0.5
1,796,192 - AMB_RS08385 0.22 -0.2
1,796,192 - AMB_RS08385 0.22 -2.8
1,796,192 - AMB_RS08385 0.22 +0.4
1,796,192 - AMB_RS08385 0.22 +0.3
1,796,192 - AMB_RS08385 0.22 -0.1
1,796,192 - AMB_RS08385 0.22 -0.5
1,796,192 - AMB_RS08385 0.22 +1.6
1,796,206 + AMB_RS08385 0.22 -2.2
1,796,206 + AMB_RS08385 0.22 -2.9
1,796,206 + AMB_RS08385 0.22 -3.1
1,796,207 - AMB_RS08385 0.22 -0.4
1,796,207 - AMB_RS08385 0.22 -0.0
1,796,222 - AMB_RS08385 0.23 -0.4
1,796,294 - AMB_RS08385 0.27 -0.8
1,796,462 - AMB_RS08385 0.36 +0.1
1,796,462 - AMB_RS08385 0.36 -0.1
1,796,522 - AMB_RS08385 0.40 +0.6
1,796,522 - AMB_RS08385 0.40 +0.4
1,796,660 - AMB_RS08385 0.47 -2.1
1,796,660 - AMB_RS08385 0.47 +0.1
1,796,660 - AMB_RS08385 0.47 -0.5

Or see this region's nucleotide sequence