Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07840

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07835 and AMB_RS07840 are separated by 63 nucleotidesAMB_RS07840 and AMB_RS07845 are separated by 96 nucleotides AMB_RS07835: AMB_RS07835 - acyl-CoA synthetase AMP-fatty acid ligase, at 1,680,639 to 1,682,141 _RS07835 AMB_RS07840: AMB_RS07840 - ABC transporter substrate-binding protein, at 1,682,205 to 1,683,359 _RS07840 AMB_RS07845: AMB_RS07845 - FadR family transcriptional regulator, at 1,683,456 to 1,684,244 _RS07845 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1681.218 kb on + strand, within AMB_RS07835at 1681.218 kb on + strand, within AMB_RS07835at 1681.218 kb on + strand, within AMB_RS07835at 1681.219 kb on - strand, within AMB_RS07835at 1681.219 kb on - strand, within AMB_RS07835at 1681.384 kb on + strand, within AMB_RS07835at 1681.666 kb on + strand, within AMB_RS07835at 1681.666 kb on + strand, within AMB_RS07835at 1681.666 kb on + strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.667 kb on - strand, within AMB_RS07835at 1681.933 kb on + strand, within AMB_RS07835at 1681.933 kb on + strand, within AMB_RS07835at 1682.051 kb on - strandat 1682.290 kb on + strandat 1682.290 kb on + strandat 1682.290 kb on + strandat 1682.291 kb on - strandat 1682.291 kb on - strandat 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.461 kb on + strand, within AMB_RS07840at 1682.614 kb on + strand, within AMB_RS07840at 1682.614 kb on + strand, within AMB_RS07840at 1682.614 kb on + strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.615 kb on - strand, within AMB_RS07840at 1682.761 kb on + strand, within AMB_RS07840at 1682.762 kb on - strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.992 kb on + strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1682.993 kb on - strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.136 kb on + strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.137 kb on - strand, within AMB_RS07840at 1683.199 kb on + strand, within AMB_RS07840at 1683.199 kb on + strand, within AMB_RS07840at 1683.199 kb on + strand, within AMB_RS07840at 1683.200 kb on - strand, within AMB_RS07840at 1683.345 kb on - strandat 1683.345 kb on - strandat 1683.379 kb on - strandat 1683.385 kb on + strandat 1683.385 kb on + strandat 1683.385 kb on + strandat 1683.385 kb on + strandat 1683.386 kb on - strandat 1683.395 kb on + strandat 1683.396 kb on - strandat 1683.396 kb on - strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.508 kb on + strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.509 kb on - strandat 1683.947 kb on + strand, within AMB_RS07845at 1683.947 kb on + strand, within AMB_RS07845at 1683.965 kb on + strand, within AMB_RS07845at 1683.965 kb on + strand, within AMB_RS07845at 1683.966 kb on - strand, within AMB_RS07845at 1683.966 kb on - strand, within AMB_RS07845at 1684.026 kb on + strand, within AMB_RS07845at 1684.026 kb on + strand, within AMB_RS07845at 1684.027 kb on - strand, within AMB_RS07845at 1684.034 kb on + strand, within AMB_RS07845at 1684.034 kb on + strand, within AMB_RS07845at 1684.034 kb on + strand, within AMB_RS07845at 1684.034 kb on + strand, within AMB_RS07845at 1684.035 kb on - strand, within AMB_RS07845at 1684.035 kb on - strand, within AMB_RS07845at 1684.077 kb on + strand, within AMB_RS07845at 1684.077 kb on + strand, within AMB_RS07845at 1684.078 kb on - strand, within AMB_RS07845at 1684.086 kb on + strand, within AMB_RS07845at 1684.087 kb on - strand, within AMB_RS07845at 1684.087 kb on - strand, within AMB_RS07845at 1684.087 kb on - strand, within AMB_RS07845at 1684.224 kb on + strandat 1684.225 kb on - strandat 1684.242 kb on + strandat 1684.242 kb on + strandat 1684.243 kb on - strandat 1684.243 kb on - strandat 1684.243 kb on - strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.246 kb on + strandat 1684.247 kb on - strandat 1684.247 kb on - strandat 1684.247 kb on - strandat 1684.247 kb on - strandat 1684.247 kb on - strandat 1684.346 kb on + strandat 1684.346 kb on + strandat 1684.346 kb on + strandat 1684.347 kb on - strandat 1684.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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1,681,218 + AMB_RS07835 0.39 -3.1
1,681,218 + AMB_RS07835 0.39 +0.2
1,681,218 + AMB_RS07835 0.39 -0.5
1,681,219 - AMB_RS07835 0.39 +0.7
1,681,219 - AMB_RS07835 0.39 +0.2
1,681,384 + AMB_RS07835 0.50 +0.0
1,681,666 + AMB_RS07835 0.68 -0.7
1,681,666 + AMB_RS07835 0.68 -1.1
1,681,666 + AMB_RS07835 0.68 +0.2
1,681,667 - AMB_RS07835 0.68 -1.1
1,681,667 - AMB_RS07835 0.68 +0.5
1,681,667 - AMB_RS07835 0.68 +0.5
1,681,667 - AMB_RS07835 0.68 -0.8
1,681,933 + AMB_RS07835 0.86 +0.6
1,681,933 + AMB_RS07835 0.86 +0.7
1,682,051 - +0.4
1,682,290 + -1.7
1,682,290 + -2.0
1,682,290 + +1.5
1,682,291 - -1.7
1,682,291 - -2.3
1,682,461 + AMB_RS07840 0.22 -0.9
1,682,461 + AMB_RS07840 0.22 -2.1
1,682,461 + AMB_RS07840 0.22 -2.5
1,682,461 + AMB_RS07840 0.22 -1.3
1,682,461 + AMB_RS07840 0.22 -0.9
1,682,461 + AMB_RS07840 0.22 -1.7
1,682,461 + AMB_RS07840 0.22 -0.3
1,682,614 + AMB_RS07840 0.35 -1.1
1,682,614 + AMB_RS07840 0.35 -1.1
1,682,614 + AMB_RS07840 0.35 -2.3
1,682,615 - AMB_RS07840 0.35 -4.2
1,682,615 - AMB_RS07840 0.35 -3.8
1,682,615 - AMB_RS07840 0.35 -3.7
1,682,615 - AMB_RS07840 0.35 -3.6
1,682,615 - AMB_RS07840 0.35 -0.1
1,682,615 - AMB_RS07840 0.35 -1.2
1,682,615 - AMB_RS07840 0.35 -1.7
1,682,615 - AMB_RS07840 0.35 -1.1
1,682,615 - AMB_RS07840 0.35 -1.4
1,682,615 - AMB_RS07840 0.35 -0.5
1,682,615 - AMB_RS07840 0.35 -1.3
1,682,615 - AMB_RS07840 0.35 -0.9
1,682,615 - AMB_RS07840 0.35 -1.4
1,682,761 + AMB_RS07840 0.48 -2.5
1,682,762 - AMB_RS07840 0.48 -2.0
1,682,992 + AMB_RS07840 0.68 -0.1
1,682,992 + AMB_RS07840 0.68 -1.3
1,682,992 + AMB_RS07840 0.68 -2.2
1,682,992 + AMB_RS07840 0.68 -2.5
1,682,992 + AMB_RS07840 0.68 -0.5
1,682,992 + AMB_RS07840 0.68 -2.0
1,682,992 + AMB_RS07840 0.68 -1.2
1,682,993 - AMB_RS07840 0.68 +0.7
1,682,993 - AMB_RS07840 0.68 -1.7
1,682,993 - AMB_RS07840 0.68 -1.7
1,682,993 - AMB_RS07840 0.68 -1.8
1,682,993 - AMB_RS07840 0.68 -0.5
1,683,136 + AMB_RS07840 0.81 -0.9
1,683,136 + AMB_RS07840 0.81 -1.9
1,683,136 + AMB_RS07840 0.81 -0.9
1,683,136 + AMB_RS07840 0.81 -0.9
1,683,137 - AMB_RS07840 0.81 -2.3
1,683,137 - AMB_RS07840 0.81 -0.9
1,683,137 - AMB_RS07840 0.81 -3.5
1,683,137 - AMB_RS07840 0.81 -0.1
1,683,137 - AMB_RS07840 0.81 -1.7
1,683,137 - AMB_RS07840 0.81 -2.1
1,683,199 + AMB_RS07840 0.86 -0.6
1,683,199 + AMB_RS07840 0.86 -1.6
1,683,199 + AMB_RS07840 0.86 -1.3
1,683,200 - AMB_RS07840 0.86 -2.7
1,683,345 - -1.7
1,683,345 - -0.9
1,683,379 - +1.9
1,683,385 + +0.3
1,683,385 + -0.5
1,683,385 + +0.6
1,683,385 + +0.9
1,683,386 - -2.4
1,683,395 + -0.5
1,683,396 - -1.3
1,683,396 - +3.4
1,683,508 + -0.5
1,683,508 + -1.2
1,683,508 + +0.2
1,683,508 + -0.5
1,683,508 + -0.8
1,683,508 + -0.9
1,683,508 + -2.0
1,683,508 + -0.9
1,683,509 - -0.5
1,683,509 - +2.2
1,683,509 - +1.0
1,683,509 - +1.7
1,683,509 - -1.9
1,683,509 - -0.1
1,683,509 - +1.9
1,683,509 - +2.8
1,683,509 - -3.2
1,683,509 - +2.7
1,683,947 + AMB_RS07845 0.62 -0.6
1,683,947 + AMB_RS07845 0.62 +0.0
1,683,965 + AMB_RS07845 0.65 -2.2
1,683,965 + AMB_RS07845 0.65 +0.5
1,683,966 - AMB_RS07845 0.65 +0.8
1,683,966 - AMB_RS07845 0.65 -1.1
1,684,026 + AMB_RS07845 0.72 +0.5
1,684,026 + AMB_RS07845 0.72 -1.3
1,684,027 - AMB_RS07845 0.72 -1.0
1,684,034 + AMB_RS07845 0.73 -1.1
1,684,034 + AMB_RS07845 0.73 -0.9
1,684,034 + AMB_RS07845 0.73 -2.2
1,684,034 + AMB_RS07845 0.73 +0.5
1,684,035 - AMB_RS07845 0.73 +0.5
1,684,035 - AMB_RS07845 0.73 -0.6
1,684,077 + AMB_RS07845 0.79 +0.5
1,684,077 + AMB_RS07845 0.79 +0.1
1,684,078 - AMB_RS07845 0.79 +0.8
1,684,086 + AMB_RS07845 0.80 -1.1
1,684,087 - AMB_RS07845 0.80 +1.3
1,684,087 - AMB_RS07845 0.80 -0.5
1,684,087 - AMB_RS07845 0.80 +2.8
1,684,224 + +0.2
1,684,225 - -0.9
1,684,242 + +0.3
1,684,242 + +0.6
1,684,243 - +1.5
1,684,243 - -0.6
1,684,243 - -0.5
1,684,246 + +0.3
1,684,246 + +0.3
1,684,246 + +0.0
1,684,246 + +0.1
1,684,246 + +0.5
1,684,246 + -1.3
1,684,246 + -0.4
1,684,246 + -2.1
1,684,247 - -0.2
1,684,247 - +0.4
1,684,247 - -1.3
1,684,247 - +0.8
1,684,247 - -2.7
1,684,346 + +1.1
1,684,346 + -0.1
1,684,346 + -1.9
1,684,347 - +0.6
1,684,347 - -1.1

Or see this region's nucleotide sequence