Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07345

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07340 and AMB_RS07345 are separated by 193 nucleotidesAMB_RS07345 and AMB_RS07350 overlap by 4 nucleotidesAMB_RS07350 and AMB_RS07355 overlap by 19 nucleotides AMB_RS07340: AMB_RS07340 - hypothetical protein, at 1,585,621 to 1,586,943 _RS07340 AMB_RS07345: AMB_RS07345 - hypothetical protein, at 1,587,137 to 1,588,048 _RS07345 AMB_RS07350: AMB_RS07350 - flavonol 3-sulfotransferase, at 1,588,045 to 1,588,887 _RS07350 AMB_RS07355: AMB_RS07355 - hypothetical protein, at 1,588,869 to 1,589,618 _RS07355 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -3 -2 -1 0 1at 1586.258 kb on - strand, within AMB_RS07340at 1586.384 kb on + strand, within AMB_RS07340at 1586.384 kb on + strand, within AMB_RS07340at 1586.384 kb on + strand, within AMB_RS07340at 1586.384 kb on + strand, within AMB_RS07340at 1586.385 kb on - strand, within AMB_RS07340at 1586.385 kb on - strand, within AMB_RS07340at 1586.385 kb on - strand, within AMB_RS07340at 1586.385 kb on - strand, within AMB_RS07340at 1586.385 kb on - strand, within AMB_RS07340at 1586.385 kb on - strand, within AMB_RS07340at 1586.427 kb on - strand, within AMB_RS07340at 1586.472 kb on - strand, within AMB_RS07340at 1586.472 kb on - strand, within AMB_RS07340at 1586.934 kb on + strandat 1586.935 kb on - strandat 1586.935 kb on - strandat 1586.988 kb on + strandat 1586.994 kb on + strandat 1586.995 kb on - strandat 1586.996 kb on + strandat 1586.996 kb on + strandat 1586.996 kb on + strandat 1586.997 kb on - strandat 1586.997 kb on - strandat 1587.090 kb on + strandat 1587.091 kb on - strandat 1587.091 kb on - strandat 1587.091 kb on - strandat 1587.101 kb on - strandat 1587.388 kb on + strand, within AMB_RS07345at 1587.389 kb on - strand, within AMB_RS07345at 1587.482 kb on + strand, within AMB_RS07345at 1587.483 kb on - strand, within AMB_RS07345at 1587.659 kb on + strand, within AMB_RS07345at 1587.659 kb on + strand, within AMB_RS07345at 1587.749 kb on + strand, within AMB_RS07345at 1587.749 kb on + strand, within AMB_RS07345at 1588.095 kb on + strandat 1588.095 kb on + strandat 1588.095 kb on + strandat 1588.096 kb on - strandat 1588.327 kb on + strand, within AMB_RS07350at 1588.327 kb on + strand, within AMB_RS07350at 1588.327 kb on + strand, within AMB_RS07350at 1588.328 kb on - strand, within AMB_RS07350at 1588.328 kb on - strand, within AMB_RS07350at 1588.335 kb on + strand, within AMB_RS07350at 1588.335 kb on + strand, within AMB_RS07350at 1588.335 kb on + strand, within AMB_RS07350at 1588.335 kb on + strand, within AMB_RS07350at 1588.336 kb on - strand, within AMB_RS07350at 1588.373 kb on - strand, within AMB_RS07350at 1588.373 kb on - strand, within AMB_RS07350at 1588.419 kb on + strand, within AMB_RS07350at 1588.419 kb on + strand, within AMB_RS07350at 1588.419 kb on + strand, within AMB_RS07350at 1588.420 kb on - strand, within AMB_RS07350at 1588.420 kb on - strand, within AMB_RS07350at 1588.420 kb on - strand, within AMB_RS07350at 1588.420 kb on - strand, within AMB_RS07350at 1588.420 kb on - strand, within AMB_RS07350at 1588.420 kb on - strand, within AMB_RS07350at 1588.496 kb on - strand, within AMB_RS07350at 1588.871 kb on - strandat 1588.871 kb on - strandat 1588.885 kb on + strandat 1588.885 kb on + strandat 1588.886 kb on - strandat 1588.886 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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1,586,258 - AMB_RS07340 0.48 -0.8
1,586,384 + AMB_RS07340 0.58 -2.1
1,586,384 + AMB_RS07340 0.58 -1.5
1,586,384 + AMB_RS07340 0.58 -0.5
1,586,384 + AMB_RS07340 0.58 -1.1
1,586,385 - AMB_RS07340 0.58 -0.5
1,586,385 - AMB_RS07340 0.58 +0.5
1,586,385 - AMB_RS07340 0.58 +1.2
1,586,385 - AMB_RS07340 0.58 +0.1
1,586,385 - AMB_RS07340 0.58 -2.8
1,586,385 - AMB_RS07340 0.58 -2.1
1,586,427 - AMB_RS07340 0.61 -0.8
1,586,472 - AMB_RS07340 0.64 -2.4
1,586,472 - AMB_RS07340 0.64 -0.6
1,586,934 + -0.8
1,586,935 - -0.1
1,586,935 - -1.1
1,586,988 + +0.0
1,586,994 + +1.0
1,586,995 - +0.3
1,586,996 + -0.3
1,586,996 + -1.5
1,586,996 + -0.1
1,586,997 - -0.3
1,586,997 - +0.0
1,587,090 + -0.5
1,587,091 - +0.4
1,587,091 - +0.4
1,587,091 - -2.2
1,587,101 - -1.1
1,587,388 + AMB_RS07345 0.28 +0.8
1,587,389 - AMB_RS07345 0.28 +0.4
1,587,482 + AMB_RS07345 0.38 -0.8
1,587,483 - AMB_RS07345 0.38 -0.4
1,587,659 + AMB_RS07345 0.57 +0.5
1,587,659 + AMB_RS07345 0.57 -1.3
1,587,749 + AMB_RS07345 0.67 +0.0
1,587,749 + AMB_RS07345 0.67 -1.5
1,588,095 + -1.4
1,588,095 + -0.6
1,588,095 + +0.0
1,588,096 - -0.3
1,588,327 + AMB_RS07350 0.33 -0.2
1,588,327 + AMB_RS07350 0.33 -0.3
1,588,327 + AMB_RS07350 0.33 +1.5
1,588,328 - AMB_RS07350 0.34 -0.1
1,588,328 - AMB_RS07350 0.34 +1.5
1,588,335 + AMB_RS07350 0.34 +0.3
1,588,335 + AMB_RS07350 0.34 +0.7
1,588,335 + AMB_RS07350 0.34 -0.2
1,588,335 + AMB_RS07350 0.34 +0.7
1,588,336 - AMB_RS07350 0.35 -0.1
1,588,373 - AMB_RS07350 0.39 +1.5
1,588,373 - AMB_RS07350 0.39 +1.1
1,588,419 + AMB_RS07350 0.44 +0.5
1,588,419 + AMB_RS07350 0.44 +0.3
1,588,419 + AMB_RS07350 0.44 +0.1
1,588,420 - AMB_RS07350 0.44 -0.7
1,588,420 - AMB_RS07350 0.44 -1.8
1,588,420 - AMB_RS07350 0.44 -0.2
1,588,420 - AMB_RS07350 0.44 -0.5
1,588,420 - AMB_RS07350 0.44 -0.6
1,588,420 - AMB_RS07350 0.44 -0.1
1,588,496 - AMB_RS07350 0.53 -0.8
1,588,871 - -0.5
1,588,871 - -0.2
1,588,885 + -1.1
1,588,885 + -0.3
1,588,886 - -0.6
1,588,886 - -0.5

Or see this region's nucleotide sequence