Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04495 and AMB_RS04500 are separated by 130 nucleotides AMB_RS04500 and AMB_RS04505 are separated by 46 nucleotides AMB_RS04505 and AMB_RS04510 are separated by 9 nucleotides AMB_RS04510 and AMB_RS04515 are separated by 26 nucleotides
AMB_RS04495: AMB_RS04495 - cytochrome c-552 precursor, at 942,706 to 943,626
_RS04495
AMB_RS04500: AMB_RS04500 - cytochrome c-552 precursor, at 943,757 to 944,440
_RS04500
AMB_RS04505: AMB_RS04505 - YqgE/AlgH family protein, at 944,487 to 945,059
_RS04505
AMB_RS04510: AMB_RS04510 - ferrous iron transporter, at 945,069 to 945,941
_RS04510
AMB_RS04515: AMB_RS04515 - pyridoxine/pyridoxamine 5'-phosphate oxidase, at 945,968 to 946,555
_RS04515
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 943.527 kb on - strand, within AMB_RS04495 at 943.527 kb on - strand, within AMB_RS04495 at 943.657 kb on + strand at 943.658 kb on - strand at 943.658 kb on - strand at 943.719 kb on - strand at 943.860 kb on - strand, within AMB_RS04500 at 943.860 kb on - strand, within AMB_RS04500 at 943.865 kb on + strand, within AMB_RS04500 at 943.866 kb on - strand, within AMB_RS04500 at 943.950 kb on - strand, within AMB_RS04500 at 943.979 kb on + strand, within AMB_RS04500 at 943.980 kb on - strand, within AMB_RS04500 at 944.228 kb on + strand, within AMB_RS04500 at 944.228 kb on + strand, within AMB_RS04500 at 944.229 kb on - strand, within AMB_RS04500 at 944.229 kb on - strand, within AMB_RS04500 at 944.229 kb on - strand, within AMB_RS04500 at 944.312 kb on + strand, within AMB_RS04500 at 944.312 kb on + strand, within AMB_RS04500 at 944.313 kb on - strand, within AMB_RS04500 at 944.313 kb on - strand, within AMB_RS04500 at 944.313 kb on - strand, within AMB_RS04500 at 944.475 kb on + strand at 944.475 kb on + strand at 944.476 kb on - strand at 944.476 kb on - strand at 944.492 kb on + strand at 944.493 kb on - strand at 944.493 kb on - strand at 944.493 kb on - strand at 944.505 kb on - strand at 944.580 kb on + strand, within AMB_RS04505 at 944.580 kb on + strand, within AMB_RS04505 at 944.581 kb on - strand, within AMB_RS04505 at 944.581 kb on - strand, within AMB_RS04505 at 944.766 kb on + strand, within AMB_RS04505 at 944.883 kb on + strand, within AMB_RS04505 at 944.991 kb on + strand, within AMB_RS04505 at 944.991 kb on + strand, within AMB_RS04505 at 944.991 kb on + strand, within AMB_RS04505 at 944.992 kb on - strand, within AMB_RS04505 at 944.992 kb on - strand, within AMB_RS04505 at 944.992 kb on - strand, within AMB_RS04505 at 945.070 kb on + strand at 945.071 kb on - strand at 945.333 kb on + strand, within AMB_RS04510 at 945.505 kb on + strand, within AMB_RS04510 at 945.505 kb on + strand, within AMB_RS04510 at 945.506 kb on - strand, within AMB_RS04510 at 945.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 943,527 - AMB_RS04495 0.89 -1.6 943,527 - AMB_RS04495 0.89 +0.1 943,657 + -0.1 943,658 - -1.9 943,658 - +0.3 943,719 - +0.5 943,860 - AMB_RS04500 0.15 -0.1 943,860 - AMB_RS04500 0.15 -0.1 943,865 + AMB_RS04500 0.16 +0.5 943,866 - AMB_RS04500 0.16 +1.5 943,950 - AMB_RS04500 0.28 -0.1 943,979 + AMB_RS04500 0.32 -0.5 943,980 - AMB_RS04500 0.33 +0.1 944,228 + AMB_RS04500 0.69 -1.6 944,228 + AMB_RS04500 0.69 +0.9 944,229 - AMB_RS04500 0.69 +0.0 944,229 - AMB_RS04500 0.69 +0.1 944,229 - AMB_RS04500 0.69 -1.5 944,312 + AMB_RS04500 0.81 -0.6 944,312 + AMB_RS04500 0.81 +0.8 944,313 - AMB_RS04500 0.81 +0.0 944,313 - AMB_RS04500 0.81 -1.3 944,313 - AMB_RS04500 0.81 +1.3 944,475 + +0.5 944,475 + -0.7 944,476 - -3.2 944,476 - +0.6 944,492 + -1.2 944,493 - -2.4 944,493 - -1.0 944,493 - +0.6 944,505 - -1.9 944,580 + AMB_RS04505 0.16 +1.6 944,580 + AMB_RS04505 0.16 -0.0 944,581 - AMB_RS04505 0.16 -2.2 944,581 - AMB_RS04505 0.16 -0.8 944,766 + AMB_RS04505 0.49 -0.2 944,883 + AMB_RS04505 0.69 -0.7 944,991 + AMB_RS04505 0.88 -1.2 944,991 + AMB_RS04505 0.88 -1.9 944,991 + AMB_RS04505 0.88 +0.4 944,992 - AMB_RS04505 0.88 -1.6 944,992 - AMB_RS04505 0.88 -0.6 944,992 - AMB_RS04505 0.88 +0.1 945,070 + +0.4 945,071 - -0.0 945,333 + AMB_RS04510 0.30 -0.7 945,505 + AMB_RS04510 0.50 -0.3 945,505 + AMB_RS04510 0.50 -2.0 945,506 - AMB_RS04510 0.50 +1.6 945,925 + -1.6
Or see this region's nucleotide sequence