Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03960 and AMB_RS03965 overlap by 4 nucleotides AMB_RS03965 and AMB_RS03970 overlap by 4 nucleotides AMB_RS03970 and AMB_RS03975 overlap by 4 nucleotides
AMB_RS03960: AMB_RS03960 - ABC transporter permease, at 830,614 to 831,414
_RS03960
AMB_RS03965: AMB_RS03965 - ABC transporter ATP-binding protein, at 831,411 to 832,154
_RS03965
AMB_RS03970: AMB_RS03970 - hypothetical protein, at 832,151 to 833,413
_RS03970
AMB_RS03975: AMB_RS03975 - hypothetical protein, at 833,410 to 834,744
_RS03975
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.362 kb on + strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.363 kb on - strand at 831.634 kb on + strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.635 kb on - strand, within AMB_RS03965 at 831.857 kb on - strand, within AMB_RS03965 at 831.857 kb on - strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.904 kb on + strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 831.905 kb on - strand, within AMB_RS03965 at 832.425 kb on + strand, within AMB_RS03970 at 832.426 kb on - strand, within AMB_RS03970 at 832.426 kb on - strand, within AMB_RS03970 at 832.488 kb on + strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 832.489 kb on - strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.025 kb on + strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.026 kb on - strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.043 kb on + strand, within AMB_RS03970 at 833.044 kb on - strand, within AMB_RS03970 at 833.044 kb on - strand, within AMB_RS03970 at 833.163 kb on + strand, within AMB_RS03970 at 833.163 kb on + strand, within AMB_RS03970 at 833.163 kb on + strand, within AMB_RS03970 at 833.164 kb on - strand, within AMB_RS03970 at 833.164 kb on - strand, within AMB_RS03970 at 833.237 kb on - strand, within AMB_RS03970 at 833.346 kb on + strand at 833.346 kb on + strand at 833.346 kb on + strand at 833.346 kb on + strand at 833.346 kb on + strand at 833.523 kb on + strand at 833.524 kb on - strand at 833.750 kb on + strand, within AMB_RS03975 at 833.751 kb on - strand, within AMB_RS03975 at 833.762 kb on + strand, within AMB_RS03975 at 833.763 kb on - strand, within AMB_RS03975 at 833.841 kb on - strand, within AMB_RS03975 at 833.841 kb on - strand, within AMB_RS03975 at 833.841 kb on - strand, within AMB_RS03975 at 834.301 kb on + strand, within AMB_RS03975 at 834.357 kb on - strand, within AMB_RS03975 at 834.375 kb on - strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.377 kb on + strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975 at 834.378 kb on - strand, within AMB_RS03975
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 831,362 + -0.5 831,362 + +0.9 831,362 + +1.8 831,362 + +0.1 831,362 + +0.1 831,362 + -3.1 831,362 + -1.6 831,362 + +0.5 831,362 + -0.2 831,362 + -0.5 831,362 + -1.6 831,363 - -1.1 831,363 - +1.5 831,363 - -1.5 831,363 - -0.3 831,363 - -1.5 831,363 - -0.5 831,363 - -2.4 831,363 - -0.6 831,363 - -0.8 831,634 + AMB_RS03965 0.30 -1.1 831,635 - AMB_RS03965 0.30 -1.5 831,635 - AMB_RS03965 0.30 -1.5 831,635 - AMB_RS03965 0.30 -1.5 831,635 - AMB_RS03965 0.30 +0.2 831,635 - AMB_RS03965 0.30 -0.1 831,857 - AMB_RS03965 0.60 -1.9 831,857 - AMB_RS03965 0.60 -0.1 831,904 + AMB_RS03965 0.66 -0.5 831,904 + AMB_RS03965 0.66 -0.6 831,904 + AMB_RS03965 0.66 -1.5 831,904 + AMB_RS03965 0.66 +0.2 831,905 - AMB_RS03965 0.66 -0.5 831,905 - AMB_RS03965 0.66 -0.5 831,905 - AMB_RS03965 0.66 -0.0 831,905 - AMB_RS03965 0.66 -2.3 832,425 + AMB_RS03970 0.22 -0.1 832,426 - AMB_RS03970 0.22 -0.2 832,426 - AMB_RS03970 0.22 -1.6 832,488 + AMB_RS03970 0.27 -0.0 832,489 - AMB_RS03970 0.27 -0.3 832,489 - AMB_RS03970 0.27 -0.8 832,489 - AMB_RS03970 0.27 -0.0 833,025 + AMB_RS03970 0.69 +0.1 833,025 + AMB_RS03970 0.69 +0.5 833,025 + AMB_RS03970 0.69 -0.1 833,025 + AMB_RS03970 0.69 -1.1 833,025 + AMB_RS03970 0.69 +0.2 833,026 - AMB_RS03970 0.69 +0.3 833,026 - AMB_RS03970 0.69 -1.6 833,026 - AMB_RS03970 0.69 -1.8 833,043 + AMB_RS03970 0.71 +0.5 833,043 + AMB_RS03970 0.71 +0.1 833,043 + AMB_RS03970 0.71 -0.8 833,043 + AMB_RS03970 0.71 -0.1 833,043 + AMB_RS03970 0.71 -0.1 833,043 + AMB_RS03970 0.71 +0.2 833,043 + AMB_RS03970 0.71 +1.5 833,044 - AMB_RS03970 0.71 -0.1 833,044 - AMB_RS03970 0.71 -1.0 833,163 + AMB_RS03970 0.80 +0.2 833,163 + AMB_RS03970 0.80 -1.5 833,163 + AMB_RS03970 0.80 +0.6 833,164 - AMB_RS03970 0.80 +0.5 833,164 - AMB_RS03970 0.80 +0.8 833,237 - AMB_RS03970 0.86 +0.1 833,346 + -0.2 833,346 + +0.2 833,346 + +0.2 833,346 + +1.4 833,346 + +0.2 833,523 + -0.8 833,524 - -0.3 833,750 + AMB_RS03975 0.25 +0.7 833,751 - AMB_RS03975 0.26 -1.9 833,762 + AMB_RS03975 0.26 -1.8 833,763 - AMB_RS03975 0.26 +0.6 833,841 - AMB_RS03975 0.32 -2.2 833,841 - AMB_RS03975 0.32 +0.3 833,841 - AMB_RS03975 0.32 +0.6 834,301 + AMB_RS03975 0.67 +1.5 834,357 - AMB_RS03975 0.71 -0.6 834,375 - AMB_RS03975 0.72 +0.1 834,377 + AMB_RS03975 0.72 +0.4 834,377 + AMB_RS03975 0.72 -1.8 834,377 + AMB_RS03975 0.72 +0.5 834,377 + AMB_RS03975 0.72 -0.9 834,377 + AMB_RS03975 0.72 +0.0 834,378 - AMB_RS03975 0.73 +0.6 834,378 - AMB_RS03975 0.73 -0.5 834,378 - AMB_RS03975 0.73 -0.7 834,378 - AMB_RS03975 0.73 -0.5
Or see this region's nucleotide sequence