Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03540 and AMB_RS03545 are separated by 28 nucleotides AMB_RS03545 and AMB_RS03550 are separated by 86 nucleotides AMB_RS03550 and AMB_RS03555 overlap by 14 nucleotides
AMB_RS03540: AMB_RS03540 - hypothetical protein, at 743,507 to 744,361
_RS03540
AMB_RS03545: AMB_RS03545 - hypothetical protein, at 744,390 to 744,887
_RS03545
AMB_RS03550: AMB_RS03550 - hypothetical protein, at 744,974 to 746,083
_RS03550
AMB_RS03555: AMB_RS03555 - tetratricopeptide repeat protein, at 746,070 to 747,443
_RS03555
Position (kb) 744
745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 744.099 kb on - strand, within AMB_RS03540 at 744.099 kb on - strand, within AMB_RS03540 at 744.099 kb on - strand, within AMB_RS03540 at 744.128 kb on + strand, within AMB_RS03540 at 744.128 kb on + strand, within AMB_RS03540 at 744.128 kb on + strand, within AMB_RS03540 at 744.129 kb on - strand, within AMB_RS03540 at 744.326 kb on + strand at 744.326 kb on + strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.327 kb on - strand at 744.401 kb on + strand at 744.402 kb on - strand at 744.402 kb on - strand at 744.411 kb on + strand at 744.412 kb on - strand at 744.412 kb on - strand at 744.412 kb on - strand at 744.735 kb on - strand, within AMB_RS03545 at 744.837 kb on + strand, within AMB_RS03545 at 744.863 kb on + strand at 744.863 kb on + strand at 744.864 kb on - strand at 744.864 kb on - strand at 745.301 kb on + strand, within AMB_RS03550 at 745.302 kb on - strand, within AMB_RS03550 at 745.352 kb on + strand, within AMB_RS03550 at 745.353 kb on - strand, within AMB_RS03550 at 745.604 kb on + strand, within AMB_RS03550 at 745.829 kb on + strand, within AMB_RS03550 at 745.830 kb on - strand, within AMB_RS03550 at 745.830 kb on - strand, within AMB_RS03550 at 745.830 kb on - strand, within AMB_RS03550 at 746.056 kb on - strand at 746.283 kb on + strand, within AMB_RS03555 at 746.283 kb on + strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.442 kb on + strand, within AMB_RS03555 at 746.841 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.866 kb on - strand, within AMB_RS03555 at 746.866 kb on - strand, within AMB_RS03555 at 746.866 kb on - strand, within AMB_RS03555 at 746.908 kb on - strand, within AMB_RS03555 at 746.937 kb on + strand, within AMB_RS03555 at 746.937 kb on + strand, within AMB_RS03555 at 746.938 kb on - strand, within AMB_RS03555
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 744,099 - AMB_RS03540 0.69 +0.7 744,099 - AMB_RS03540 0.69 +0.4 744,099 - AMB_RS03540 0.69 -0.0 744,128 + AMB_RS03540 0.73 +0.8 744,128 + AMB_RS03540 0.73 +0.3 744,128 + AMB_RS03540 0.73 -0.4 744,129 - AMB_RS03540 0.73 -2.4 744,326 + -0.0 744,326 + -0.4 744,327 - +0.3 744,327 - +0.1 744,327 - -0.0 744,327 - +0.0 744,327 - -0.9 744,327 - +1.6 744,327 - +0.1 744,327 - +0.5 744,401 + -0.3 744,402 - -0.5 744,402 - +0.0 744,411 + +1.3 744,412 - -1.0 744,412 - +0.5 744,412 - -0.0 744,735 - AMB_RS03545 0.69 -0.4 744,837 + AMB_RS03545 0.90 +0.2 744,863 + -0.6 744,863 + -0.1 744,864 - +0.6 744,864 - -0.4 745,301 + AMB_RS03550 0.29 -2.4 745,302 - AMB_RS03550 0.30 -0.4 745,352 + AMB_RS03550 0.34 -1.0 745,353 - AMB_RS03550 0.34 -1.9 745,604 + AMB_RS03550 0.57 -0.3 745,829 + AMB_RS03550 0.77 -0.2 745,830 - AMB_RS03550 0.77 +0.6 745,830 - AMB_RS03550 0.77 -3.0 745,830 - AMB_RS03550 0.77 -1.3 746,056 - -0.4 746,283 + AMB_RS03555 0.16 -0.8 746,283 + AMB_RS03555 0.16 +0.4 746,284 - AMB_RS03555 0.16 +0.5 746,284 - AMB_RS03555 0.16 -0.4 746,284 - AMB_RS03555 0.16 -0.0 746,284 - AMB_RS03555 0.16 -1.0 746,284 - AMB_RS03555 0.16 -0.8 746,284 - AMB_RS03555 0.16 -0.1 746,442 + AMB_RS03555 0.27 +0.5 746,841 + AMB_RS03555 0.56 +0.2 746,865 + AMB_RS03555 0.58 +0.5 746,865 + AMB_RS03555 0.58 -0.6 746,865 + AMB_RS03555 0.58 +0.0 746,865 + AMB_RS03555 0.58 -0.4 746,866 - AMB_RS03555 0.58 +0.6 746,866 - AMB_RS03555 0.58 +0.5 746,866 - AMB_RS03555 0.58 -0.1 746,908 - AMB_RS03555 0.61 -0.2 746,937 + AMB_RS03555 0.63 +0.1 746,937 + AMB_RS03555 0.63 -0.1 746,938 - AMB_RS03555 0.63 -2.1
Or see this region's nucleotide sequence