Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03320

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03310 and AMB_RS03315 are separated by 15 nucleotidesAMB_RS03315 and AMB_RS03320 are separated by 437 nucleotidesAMB_RS03320 and AMB_RS03330 are separated by 237 nucleotides AMB_RS03310: AMB_RS03310 - hypothetical protein, at 692,731 to 694,056 _RS03310 AMB_RS03315: AMB_RS03315 - hypothetical protein, at 694,072 to 694,356 _RS03315 AMB_RS03320: AMB_RS03320 - hypothetical protein, at 694,794 to 695,342 _RS03320 AMB_RS03330: AMB_RS03330 - IS3 family transposase, at 695,580 to 696,745 _RS03330 Position (kb) 694 695 696Strain fitness (log2 ratio) -3 -2 -1 0 1at 693.939 kb on + strandat 693.940 kb on - strandat 693.940 kb on - strandat 693.965 kb on + strandat 694.271 kb on + strand, within AMB_RS03315at 694.271 kb on + strand, within AMB_RS03315at 694.271 kb on + strand, within AMB_RS03315at 694.429 kb on + strandat 694.432 kb on - strandat 694.512 kb on + strandat 694.597 kb on + strandat 694.634 kb on + strandat 694.635 kb on - strandat 694.654 kb on + strandat 694.666 kb on - strandat 694.741 kb on + strandat 694.742 kb on - strandat 694.742 kb on - strandat 694.806 kb on + strandat 694.806 kb on + strandat 694.806 kb on + strandat 694.807 kb on - strandat 694.807 kb on - strandat 694.822 kb on - strandat 694.822 kb on - strandat 694.835 kb on + strandat 694.836 kb on - strandat 694.878 kb on + strand, within AMB_RS03320at 694.879 kb on - strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.908 kb on + strand, within AMB_RS03320at 694.909 kb on - strand, within AMB_RS03320at 695.019 kb on - strand, within AMB_RS03320at 695.030 kb on + strand, within AMB_RS03320at 695.070 kb on + strand, within AMB_RS03320at 695.070 kb on + strand, within AMB_RS03320at 695.070 kb on + strand, within AMB_RS03320at 695.071 kb on - strand, within AMB_RS03320at 695.071 kb on - strand, within AMB_RS03320at 695.071 kb on - strand, within AMB_RS03320at 695.105 kb on + strand, within AMB_RS03320at 695.106 kb on - strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.218 kb on + strand, within AMB_RS03320at 695.219 kb on - strand, within AMB_RS03320at 695.219 kb on - strand, within AMB_RS03320at 695.219 kb on - strand, within AMB_RS03320at 695.232 kb on + strand, within AMB_RS03320at 695.232 kb on + strand, within AMB_RS03320at 695.233 kb on - strand, within AMB_RS03320at 695.233 kb on - strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.283 kb on + strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.284 kb on - strand, within AMB_RS03320at 695.352 kb on + strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.356 kb on + strandat 695.357 kb on - strandat 695.357 kb on - strandat 695.357 kb on - strandat 695.357 kb on - strandat 695.368 kb on + strandat 695.496 kb on + strandat 695.496 kb on + strandat 695.496 kb on + strandat 695.497 kb on - strandat 695.497 kb on - strandat 695.497 kb on - strandat 695.497 kb on - strandat 695.497 kb on - strandat 695.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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693,939 + +0.1
693,940 - +0.4
693,940 - -0.0
693,965 + -0.3
694,271 + AMB_RS03315 0.70 +0.6
694,271 + AMB_RS03315 0.70 -2.1
694,271 + AMB_RS03315 0.70 -1.6
694,429 + -0.7
694,432 - +1.6
694,512 + -0.3
694,597 + -0.6
694,634 + -1.9
694,635 - -0.2
694,654 + -1.2
694,666 - -0.5
694,741 + -2.2
694,742 - -0.1
694,742 - +0.6
694,806 + +0.6
694,806 + -0.4
694,806 + -0.7
694,807 - -2.0
694,807 - -0.0
694,822 - -0.1
694,822 - -0.7
694,835 + -0.1
694,836 - -0.0
694,878 + AMB_RS03320 0.15 +0.4
694,879 - AMB_RS03320 0.15 +0.5
694,908 + AMB_RS03320 0.21 -0.4
694,908 + AMB_RS03320 0.21 -0.4
694,908 + AMB_RS03320 0.21 -0.4
694,908 + AMB_RS03320 0.21 +1.6
694,908 + AMB_RS03320 0.21 -0.1
694,909 - AMB_RS03320 0.21 -1.6
695,019 - AMB_RS03320 0.41 -1.6
695,030 + AMB_RS03320 0.43 +0.6
695,070 + AMB_RS03320 0.50 -0.7
695,070 + AMB_RS03320 0.50 +0.4
695,070 + AMB_RS03320 0.50 -2.0
695,071 - AMB_RS03320 0.50 -3.3
695,071 - AMB_RS03320 0.50 +0.6
695,071 - AMB_RS03320 0.50 +0.2
695,105 + AMB_RS03320 0.57 -2.2
695,106 - AMB_RS03320 0.57 +0.0
695,218 + AMB_RS03320 0.77 +1.6
695,218 + AMB_RS03320 0.77 +0.6
695,218 + AMB_RS03320 0.77 -0.0
695,218 + AMB_RS03320 0.77 -0.1
695,218 + AMB_RS03320 0.77 -2.3
695,219 - AMB_RS03320 0.77 -1.6
695,219 - AMB_RS03320 0.77 -0.1
695,219 - AMB_RS03320 0.77 -0.1
695,232 + AMB_RS03320 0.80 +0.6
695,232 + AMB_RS03320 0.80 -0.1
695,233 - AMB_RS03320 0.80 -0.3
695,233 - AMB_RS03320 0.80 -1.0
695,283 + AMB_RS03320 0.89 -0.4
695,283 + AMB_RS03320 0.89 -0.1
695,283 + AMB_RS03320 0.89 -2.0
695,283 + AMB_RS03320 0.89 -0.1
695,283 + AMB_RS03320 0.89 +1.6
695,283 + AMB_RS03320 0.89 -2.1
695,283 + AMB_RS03320 0.89 -0.4
695,284 - AMB_RS03320 0.89 -0.3
695,284 - AMB_RS03320 0.89 -0.3
695,284 - AMB_RS03320 0.89 -0.6
695,284 - AMB_RS03320 0.89 -0.3
695,352 + -1.0
695,353 - +0.1
695,353 - +0.2
695,356 + -0.7
695,356 + -0.1
695,356 + +0.0
695,356 + -1.2
695,356 + +0.3
695,356 + -1.1
695,356 + -0.7
695,357 - +0.1
695,357 - -0.1
695,357 - +0.6
695,357 - +0.4
695,368 + +1.6
695,496 + +1.6
695,496 + +0.6
695,496 + +1.6
695,497 - +0.3
695,497 - -1.0
695,497 - -0.4
695,497 - -0.2
695,497 - -0.0
695,551 - -3.3

Or see this region's nucleotide sequence