Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02710 and AMB_RS02715 are separated by 104 nucleotides AMB_RS02715 and AMB_RS02720 overlap by 1 nucleotides
AMB_RS02710: AMB_RS02710 - 2-nitropropane dioxygenase, at 567,742 to 569,139
_RS02710
AMB_RS02715: AMB_RS02715 - glycerophosphodiester phosphodiesterase, at 569,244 to 569,948
_RS02715
AMB_RS02720: AMB_RS02720 - glycosyltransferase family 9 protein, at 569,948 to 571,147
_RS02720
Position (kb) 569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 569.165 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.202 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.204 kb on - strand at 569.206 kb on - strand at 569.206 kb on - strand at 569.206 kb on - strand at 569.206 kb on - strand at 569.206 kb on - strand at 569.327 kb on + strand, within AMB_RS02715 at 569.327 kb on + strand, within AMB_RS02715 at 569.327 kb on + strand, within AMB_RS02715 at 569.328 kb on - strand, within AMB_RS02715 at 569.328 kb on - strand, within AMB_RS02715 at 569.330 kb on - strand, within AMB_RS02715 at 569.426 kb on + strand, within AMB_RS02715 at 569.547 kb on + strand, within AMB_RS02715 at 569.547 kb on + strand, within AMB_RS02715
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 569,165 - -0.4 569,202 - -1.2 569,202 - -0.2 569,202 - +0.2 569,202 - +0.6 569,202 - -1.2 569,202 - -0.6 569,202 - -0.1 569,202 - -0.6 569,202 - -0.4 569,202 - -0.0 569,202 - -0.1 569,202 - +0.5 569,202 - -0.1 569,202 - -0.2 569,202 - +0.4 569,202 - -1.5 569,202 - -1.4 569,202 - +0.6 569,202 - +1.3 569,202 - -3.0 569,202 - -0.2 569,202 - -1.7 569,204 - -1.7 569,204 - -0.0 569,204 - +1.6 569,204 - +0.6 569,204 - +0.2 569,204 - -0.5 569,204 - -1.0 569,204 - -2.3 569,204 - +0.1 569,204 - +0.5 569,204 - -0.1 569,204 - -1.5 569,204 - +1.1 569,204 - +0.2 569,204 - +0.6 569,204 - -0.9 569,204 - -1.0 569,206 - -2.1 569,206 - +0.2 569,206 - +0.8 569,206 - +0.6 569,206 - +1.6 569,327 + AMB_RS02715 0.12 -1.5 569,327 + AMB_RS02715 0.12 -1.4 569,327 + AMB_RS02715 0.12 -1.2 569,328 - AMB_RS02715 0.12 +0.6 569,328 - AMB_RS02715 0.12 -1.5 569,330 - AMB_RS02715 0.12 -1.9 569,426 + AMB_RS02715 0.26 -0.7 569,547 + AMB_RS02715 0.43 -1.4 569,547 + AMB_RS02715 0.43 -0.4
Or see this region's nucleotide sequence