Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02685 and AMB_RS02690 are separated by 11 nucleotides AMB_RS02690 and AMB_RS02695 are separated by 248 nucleotides
AMB_RS02685: AMB_RS02685 - glutamate synthase large subunit, at 557,989 to 562,503
_RS02685
AMB_RS02690: AMB_RS02690 - dihydropyrimidine dehydrogenase subunit A, at 562,515 to 563,930
_RS02690
AMB_RS02695: AMB_RS02695 - undecaprenyl-diphosphatase 1, at 564,179 to 564,982
_RS02695
Position (kb) 562
563
564 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 561.792 kb on - strand, within AMB_RS02685 at 561.792 kb on - strand, within AMB_RS02685 at 561.792 kb on - strand, within AMB_RS02685 at 561.803 kb on + strand, within AMB_RS02685 at 561.803 kb on + strand, within AMB_RS02685 at 561.803 kb on + strand, within AMB_RS02685 at 561.803 kb on + strand, within AMB_RS02685 at 561.803 kb on + strand, within AMB_RS02685 at 561.804 kb on - strand, within AMB_RS02685 at 561.804 kb on - strand, within AMB_RS02685 at 561.849 kb on - strand, within AMB_RS02685 at 561.887 kb on + strand, within AMB_RS02685 at 561.887 kb on + strand, within AMB_RS02685 at 561.887 kb on + strand, within AMB_RS02685 at 561.887 kb on + strand, within AMB_RS02685 at 561.887 kb on + strand, within AMB_RS02685 at 561.888 kb on - strand, within AMB_RS02685 at 561.920 kb on + strand, within AMB_RS02685 at 561.920 kb on + strand, within AMB_RS02685 at 561.920 kb on + strand, within AMB_RS02685 at 561.920 kb on + strand, within AMB_RS02685 at 561.920 kb on + strand, within AMB_RS02685 at 561.920 kb on + strand, within AMB_RS02685 at 561.921 kb on - strand, within AMB_RS02685 at 561.921 kb on - strand, within AMB_RS02685 at 561.921 kb on - strand, within AMB_RS02685 at 562.109 kb on + strand at 562.109 kb on + strand at 562.109 kb on + strand at 562.109 kb on + strand at 562.110 kb on - strand at 562.110 kb on - strand at 562.110 kb on - strand at 562.110 kb on - strand at 562.110 kb on - strand at 562.481 kb on + strand at 562.481 kb on + strand at 562.482 kb on - strand at 562.516 kb on + strand at 562.517 kb on - strand at 562.517 kb on - strand at 562.550 kb on - strand at 563.140 kb on + strand, within AMB_RS02690 at 563.141 kb on - strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.204 kb on - strand, within AMB_RS02690 at 563.204 kb on - strand, within AMB_RS02690 at 563.368 kb on + strand, within AMB_RS02690 at 563.369 kb on - strand, within AMB_RS02690 at 563.369 kb on - strand, within AMB_RS02690 at 563.690 kb on - strand, within AMB_RS02690 at 563.690 kb on - strand, within AMB_RS02690 at 564.144 kb on + strand at 564.144 kb on + strand at 564.144 kb on + strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.189 kb on + strand at 564.189 kb on + strand at 564.190 kb on - strand at 564.351 kb on - strand, within AMB_RS02695 at 564.416 kb on + strand, within AMB_RS02695 at 564.646 kb on - strand, within AMB_RS02695 at 564.905 kb on - strand at 564.905 kb on - strand at 564.905 kb on - strand at 564.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 561,792 - AMB_RS02685 0.84 +0.3 561,792 - AMB_RS02685 0.84 -0.7 561,792 - AMB_RS02685 0.84 -0.7 561,803 + AMB_RS02685 0.84 +0.3 561,803 + AMB_RS02685 0.84 -0.1 561,803 + AMB_RS02685 0.84 +0.7 561,803 + AMB_RS02685 0.84 -1.2 561,803 + AMB_RS02685 0.84 +0.0 561,804 - AMB_RS02685 0.84 -0.3 561,804 - AMB_RS02685 0.84 +0.6 561,849 - AMB_RS02685 0.85 -0.4 561,887 + AMB_RS02685 0.86 +0.4 561,887 + AMB_RS02685 0.86 -1.4 561,887 + AMB_RS02685 0.86 -2.7 561,887 + AMB_RS02685 0.86 +0.3 561,887 + AMB_RS02685 0.86 -0.2 561,888 - AMB_RS02685 0.86 +0.2 561,920 + AMB_RS02685 0.87 -1.2 561,920 + AMB_RS02685 0.87 -1.8 561,920 + AMB_RS02685 0.87 -0.4 561,920 + AMB_RS02685 0.87 +0.6 561,920 + AMB_RS02685 0.87 -2.2 561,920 + AMB_RS02685 0.87 -0.7 561,921 - AMB_RS02685 0.87 -0.0 561,921 - AMB_RS02685 0.87 -0.4 561,921 - AMB_RS02685 0.87 +0.0 562,109 + -0.4 562,109 + -1.8 562,109 + -0.2 562,109 + -1.4 562,110 - -0.2 562,110 - -0.7 562,110 - +0.6 562,110 - -0.7 562,110 - -2.6 562,481 + -3.0 562,481 + -0.4 562,482 - +0.0 562,516 + +0.7 562,517 - -0.0 562,517 - -0.7 562,550 - -0.3 563,140 + AMB_RS02690 0.44 +1.6 563,141 - AMB_RS02690 0.44 +0.6 563,203 + AMB_RS02690 0.49 +0.5 563,203 + AMB_RS02690 0.49 -0.4 563,203 + AMB_RS02690 0.49 +0.4 563,203 + AMB_RS02690 0.49 -0.5 563,203 + AMB_RS02690 0.49 -0.1 563,204 - AMB_RS02690 0.49 +1.0 563,204 - AMB_RS02690 0.49 -1.2 563,368 + AMB_RS02690 0.60 +1.0 563,369 - AMB_RS02690 0.60 +1.6 563,369 - AMB_RS02690 0.60 +0.2 563,690 - AMB_RS02690 0.83 -1.0 563,690 - AMB_RS02690 0.83 +0.1 564,144 + +0.0 564,144 + -1.0 564,144 + -0.7 564,145 - +0.5 564,145 - +0.6 564,145 - +0.8 564,145 - -1.4 564,145 - -1.4 564,189 + -1.8 564,189 + -1.8 564,190 - +0.0 564,351 - AMB_RS02695 0.21 -0.2 564,416 + AMB_RS02695 0.29 -2.1 564,646 - AMB_RS02695 0.58 -4.9 564,905 - +0.4 564,905 - +0.3 564,905 - +0.4 564,905 - -1.8
Or see this region's nucleotide sequence