Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02475

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02470 and AMB_RS02475 are separated by 550 nucleotidesAMB_RS02475 and AMB_RS23885 are separated by 362 nucleotides AMB_RS02470: AMB_RS02470 - DNA methyltransferase, at 511,484 to 512,650 _RS02470 AMB_RS02475: AMB_RS02475 - XRE family transcriptional regulator, at 513,201 to 513,419 _RS02475 AMB_RS23885: AMB_RS23885 - hypothetical protein, at 513,782 to 515,197 _RS23885 Position (kb) 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1at 512.387 kb on + strand, within AMB_RS02470at 512.388 kb on - strand, within AMB_RS02470at 512.388 kb on - strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.420 kb on + strand, within AMB_RS02470at 512.421 kb on - strand, within AMB_RS02470at 512.421 kb on - strand, within AMB_RS02470at 512.421 kb on - strand, within AMB_RS02470at 512.423 kb on + strand, within AMB_RS02470at 512.573 kb on + strandat 512.573 kb on + strandat 512.573 kb on + strandat 512.574 kb on - strandat 512.574 kb on - strandat 512.574 kb on - strandat 512.574 kb on - strandat 512.575 kb on + strandat 512.575 kb on + strandat 512.576 kb on - strandat 512.576 kb on - strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.674 kb on + strandat 512.675 kb on - strandat 512.675 kb on - strandat 512.675 kb on - strandat 512.675 kb on - strandat 512.715 kb on + strandat 512.716 kb on - strandat 512.716 kb on - strandat 512.791 kb on - strandat 512.830 kb on - strandat 512.902 kb on + strandat 512.954 kb on + strandat 512.954 kb on + strandat 512.954 kb on + strandat 513.059 kb on + strandat 513.059 kb on + strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.060 kb on - strandat 513.090 kb on + strandat 513.090 kb on + strandat 513.091 kb on - strandat 513.091 kb on - strandat 513.108 kb on + strandat 513.109 kb on - strandat 513.109 kb on - strandat 513.146 kb on + strandat 513.290 kb on - strand, within AMB_RS02475at 513.290 kb on - strand, within AMB_RS02475at 513.312 kb on + strand, within AMB_RS02475at 513.312 kb on + strand, within AMB_RS02475at 513.313 kb on - strand, within AMB_RS02475at 513.313 kb on - strand, within AMB_RS02475at 513.316 kb on + strand, within AMB_RS02475at 513.316 kb on + strand, within AMB_RS02475at 513.317 kb on - strand, within AMB_RS02475at 513.317 kb on - strand, within AMB_RS02475at 513.402 kb on + strandat 513.402 kb on + strandat 513.403 kb on - strandat 513.403 kb on - strandat 513.547 kb on + strandat 513.547 kb on + strandat 513.547 kb on + strandat 513.548 kb on - strandat 513.765 kb on + strandat 513.768 kb on - strandat 513.800 kb on - strandat 513.862 kb on - strandat 513.935 kb on + strand, within AMB_RS23885at 513.968 kb on - strand, within AMB_RS23885at 514.049 kb on + strand, within AMB_RS23885at 514.154 kb on - strand, within AMB_RS23885at 514.247 kb on - strand, within AMB_RS23885at 514.351 kb on + strand, within AMB_RS23885at 514.351 kb on + strand, within AMB_RS23885at 514.352 kb on - strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.356 kb on + strand, within AMB_RS23885at 514.357 kb on - strand, within AMB_RS23885at 514.357 kb on - strand, within AMB_RS23885at 514.357 kb on - strand, within AMB_RS23885at 514.407 kb on - strand, within AMB_RS23885

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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512,387 + AMB_RS02470 0.77 +0.3
512,388 - AMB_RS02470 0.77 -0.0
512,388 - AMB_RS02470 0.77 -1.1
512,420 + AMB_RS02470 0.80 -2.7
512,420 + AMB_RS02470 0.80 -0.9
512,420 + AMB_RS02470 0.80 -0.7
512,420 + AMB_RS02470 0.80 +0.2
512,420 + AMB_RS02470 0.80 +0.1
512,421 - AMB_RS02470 0.80 +0.5
512,421 - AMB_RS02470 0.80 +0.6
512,421 - AMB_RS02470 0.80 +0.1
512,423 + AMB_RS02470 0.80 -0.7
512,573 + +0.1
512,573 + +1.7
512,573 + +0.1
512,574 - -0.3
512,574 - +0.6
512,574 - -2.2
512,574 - -0.9
512,575 + -1.3
512,575 + -0.3
512,576 - -0.9
512,576 - +0.7
512,674 + +0.1
512,674 + +0.6
512,674 + +1.7
512,674 + +0.9
512,674 + +0.4
512,674 + -0.2
512,674 + -0.1
512,674 + -0.3
512,674 + +0.5
512,675 - +0.3
512,675 - +0.1
512,675 - -0.3
512,675 - -2.2
512,715 + +0.0
512,716 - +0.1
512,716 - +0.4
512,791 - +0.2
512,830 - -1.1
512,902 + +0.2
512,954 + -1.1
512,954 + -1.1
512,954 + +0.6
513,059 + -0.8
513,059 + +0.4
513,060 - +0.2
513,060 - +0.1
513,060 - +0.3
513,060 - -1.3
513,060 - -0.0
513,090 + +0.7
513,090 + +0.1
513,091 - +0.6
513,091 - +0.0
513,108 + +0.6
513,109 - -0.6
513,109 - +0.6
513,146 + +1.1
513,290 - AMB_RS02475 0.41 +0.1
513,290 - AMB_RS02475 0.41 +0.4
513,312 + AMB_RS02475 0.51 -0.5
513,312 + AMB_RS02475 0.51 -0.9
513,313 - AMB_RS02475 0.51 -0.0
513,313 - AMB_RS02475 0.51 -0.7
513,316 + AMB_RS02475 0.53 -0.2
513,316 + AMB_RS02475 0.53 -0.2
513,317 - AMB_RS02475 0.53 -0.7
513,317 - AMB_RS02475 0.53 -1.0
513,402 + +0.1
513,402 + +0.4
513,403 - +0.7
513,403 - -1.3
513,547 + +0.4
513,547 + -2.3
513,547 + +0.1
513,548 - -0.3
513,765 + +0.7
513,768 - +0.3
513,800 - +0.1
513,862 - -0.7
513,935 + AMB_RS23885 0.11 -0.9
513,968 - AMB_RS23885 0.13 -1.5
514,049 + AMB_RS23885 0.19 -1.9
514,154 - AMB_RS23885 0.26 -0.2
514,247 - AMB_RS23885 0.33 -0.4
514,351 + AMB_RS23885 0.40 -2.8
514,351 + AMB_RS23885 0.40 +0.1
514,352 - AMB_RS23885 0.40 +0.4
514,356 + AMB_RS23885 0.41 +0.2
514,356 + AMB_RS23885 0.41 +0.5
514,356 + AMB_RS23885 0.41 +0.2
514,356 + AMB_RS23885 0.41 +1.2
514,357 - AMB_RS23885 0.41 -1.7
514,357 - AMB_RS23885 0.41 -0.3
514,357 - AMB_RS23885 0.41 -0.5
514,407 - AMB_RS23885 0.44 +0.3

Or see this region's nucleotide sequence