Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02180

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02175 and AMB_RS02180 are separated by 150 nucleotidesAMB_RS02180 and AMB_RS02185 are separated by 159 nucleotides AMB_RS02175: AMB_RS02175 - hypothetical protein, at 456,310 to 457,047 _RS02175 AMB_RS02180: AMB_RS02180 - double-strand break repair protein AddB, at 457,198 to 460,125 _RS02180 AMB_RS02185: AMB_RS02185 - C4-dicarboxylate ABC transporter, at 460,285 to 461,313 _RS02185 Position (kb) 457 458 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1at 456.198 kb on - strandat 456.198 kb on - strandat 456.210 kb on + strandat 456.211 kb on - strandat 456.211 kb on - strandat 456.211 kb on - strandat 456.311 kb on + strandat 456.311 kb on + strandat 456.311 kb on + strandat 456.312 kb on - strandat 456.312 kb on - strandat 456.312 kb on - strandat 456.313 kb on + strandat 456.313 kb on + strandat 456.313 kb on + strandat 456.314 kb on - strandat 456.314 kb on - strandat 456.314 kb on - strandat 456.411 kb on + strand, within AMB_RS02175at 456.411 kb on + strand, within AMB_RS02175at 456.417 kb on - strand, within AMB_RS02175at 456.417 kb on - strand, within AMB_RS02175at 456.417 kb on - strand, within AMB_RS02175at 456.443 kb on + strand, within AMB_RS02175at 456.443 kb on + strand, within AMB_RS02175at 456.444 kb on - strand, within AMB_RS02175at 456.548 kb on + strand, within AMB_RS02175at 456.548 kb on + strand, within AMB_RS02175at 456.566 kb on + strand, within AMB_RS02175at 456.566 kb on + strand, within AMB_RS02175at 456.599 kb on + strand, within AMB_RS02175at 456.599 kb on + strand, within AMB_RS02175at 456.599 kb on + strand, within AMB_RS02175at 456.599 kb on + strand, within AMB_RS02175at 456.599 kb on + strand, within AMB_RS02175at 456.600 kb on - strand, within AMB_RS02175at 456.744 kb on + strand, within AMB_RS02175at 456.745 kb on - strand, within AMB_RS02175at 456.816 kb on + strand, within AMB_RS02175at 456.836 kb on + strand, within AMB_RS02175at 456.836 kb on + strand, within AMB_RS02175at 456.836 kb on + strand, within AMB_RS02175at 456.836 kb on + strand, within AMB_RS02175at 456.837 kb on - strand, within AMB_RS02175at 456.855 kb on + strand, within AMB_RS02175at 456.855 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.905 kb on + strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 456.906 kb on - strand, within AMB_RS02175at 457.114 kb on + strandat 457.115 kb on - strandat 459.350 kb on - strand, within AMB_RS02180at 459.425 kb on - strand, within AMB_RS02180at 460.124 kb on - strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.165 kb on + strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.166 kb on - strandat 460.216 kb on + strandat 460.217 kb on - strandat 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.507 kb on + strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.508 kb on - strand, within AMB_RS02185at 460.583 kb on - strand, within AMB_RS02185at 460.594 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.654 kb on + strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.655 kb on - strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.897 kb on + strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185at 460.898 kb on - strand, within AMB_RS02185

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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456,198 - +0.3
456,198 - +0.7
456,210 + +0.1
456,211 - -0.9
456,211 - +0.1
456,211 - +0.7
456,311 + +1.0
456,311 + +0.1
456,311 + +0.1
456,312 - +0.6
456,312 - +0.3
456,312 - +1.7
456,313 + -0.1
456,313 + -1.1
456,313 + -1.1
456,314 - +0.7
456,314 - -0.3
456,314 - -0.3
456,411 + AMB_RS02175 0.14 +0.3
456,411 + AMB_RS02175 0.14 -0.6
456,417 - AMB_RS02175 0.14 -1.5
456,417 - AMB_RS02175 0.14 -0.0
456,417 - AMB_RS02175 0.14 -0.9
456,443 + AMB_RS02175 0.18 -0.9
456,443 + AMB_RS02175 0.18 +1.3
456,444 - AMB_RS02175 0.18 -1.5
456,548 + AMB_RS02175 0.32 -0.1
456,548 + AMB_RS02175 0.32 +0.3
456,566 + AMB_RS02175 0.35 +1.7
456,566 + AMB_RS02175 0.35 -0.3
456,599 + AMB_RS02175 0.39 +0.2
456,599 + AMB_RS02175 0.39 -2.0
456,599 + AMB_RS02175 0.39 -0.3
456,599 + AMB_RS02175 0.39 +0.3
456,599 + AMB_RS02175 0.39 +0.7
456,600 - AMB_RS02175 0.39 -0.2
456,744 + AMB_RS02175 0.59 -0.9
456,745 - AMB_RS02175 0.59 -0.4
456,816 + AMB_RS02175 0.69 -0.5
456,836 + AMB_RS02175 0.71 +0.6
456,836 + AMB_RS02175 0.71 -0.0
456,836 + AMB_RS02175 0.71 +0.7
456,836 + AMB_RS02175 0.71 +0.6
456,837 - AMB_RS02175 0.71 -0.3
456,855 + AMB_RS02175 0.74 +0.2
456,855 + AMB_RS02175 0.74 +0.1
456,905 + AMB_RS02175 0.81 -0.5
456,905 + AMB_RS02175 0.81 -0.6
456,905 + AMB_RS02175 0.81 +0.3
456,905 + AMB_RS02175 0.81 -0.6
456,905 + AMB_RS02175 0.81 -0.2
456,905 + AMB_RS02175 0.81 -1.3
456,905 + AMB_RS02175 0.81 +0.1
456,905 + AMB_RS02175 0.81 -1.6
456,906 - AMB_RS02175 0.81 -0.1
456,906 - AMB_RS02175 0.81 -0.3
456,906 - AMB_RS02175 0.81 -0.2
456,906 - AMB_RS02175 0.81 +0.5
456,906 - AMB_RS02175 0.81 +1.1
456,906 - AMB_RS02175 0.81 -0.8
456,906 - AMB_RS02175 0.81 -0.4
456,906 - AMB_RS02175 0.81 -3.0
456,906 - AMB_RS02175 0.81 -1.3
456,906 - AMB_RS02175 0.81 -0.9
456,906 - AMB_RS02175 0.81 -0.3
457,114 + +0.3
457,115 - -1.6
459,350 - AMB_RS02180 0.73 +0.4
459,425 - AMB_RS02180 0.76 -2.1
460,124 - -0.3
460,165 + +0.4
460,165 + -2.4
460,165 + -1.0
460,165 + +0.7
460,165 + +1.1
460,166 - -1.3
460,166 - +0.3
460,166 - -0.6
460,166 - -1.3
460,166 - -1.1
460,166 - -0.6
460,166 - -1.6
460,216 + -0.1
460,217 - -1.1
460,507 + AMB_RS02185 0.22 -0.1
460,507 + AMB_RS02185 0.22 +0.2
460,507 + AMB_RS02185 0.22 -0.3
460,507 + AMB_RS02185 0.22 +0.4
460,508 - AMB_RS02185 0.22 +0.0
460,508 - AMB_RS02185 0.22 -0.4
460,508 - AMB_RS02185 0.22 +0.1
460,508 - AMB_RS02185 0.22 +0.0
460,508 - AMB_RS02185 0.22 -2.2
460,508 - AMB_RS02185 0.22 +1.1
460,583 - AMB_RS02185 0.29 -1.3
460,594 + AMB_RS02185 0.30 -0.3
460,654 + AMB_RS02185 0.36 +0.5
460,654 + AMB_RS02185 0.36 +0.7
460,654 + AMB_RS02185 0.36 -1.1
460,654 + AMB_RS02185 0.36 -0.3
460,655 - AMB_RS02185 0.36 +0.7
460,655 - AMB_RS02185 0.36 +0.1
460,655 - AMB_RS02185 0.36 +1.1
460,897 + AMB_RS02185 0.59 -1.6
460,897 + AMB_RS02185 0.59 -1.8
460,897 + AMB_RS02185 0.59 -1.5
460,897 + AMB_RS02185 0.59 +0.3
460,897 + AMB_RS02185 0.59 -1.3
460,897 + AMB_RS02185 0.59 -0.0
460,897 + AMB_RS02185 0.59 +0.8
460,897 + AMB_RS02185 0.59 -0.6
460,898 - AMB_RS02185 0.60 -2.0
460,898 - AMB_RS02185 0.60 +0.7
460,898 - AMB_RS02185 0.60 -0.3
460,898 - AMB_RS02185 0.60 +0.4
460,898 - AMB_RS02185 0.60 -0.4
460,898 - AMB_RS02185 0.60 +1.0
460,898 - AMB_RS02185 0.60 +0.1
460,898 - AMB_RS02185 0.60 -1.3
460,898 - AMB_RS02185 0.60 +0.7

Or see this region's nucleotide sequence