Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01980 and AMB_RS01985 are separated by 2 nucleotides AMB_RS01985 and AMB_RS01990 are separated by 29 nucleotides AMB_RS01990 and AMB_RS01995 overlap by 8 nucleotides AMB_RS01995 and AMB_RS02000 are separated by 100 nucleotides AMB_RS02000 and AMB_RS02005 overlap by 4 nucleotides
AMB_RS01980: AMB_RS01980 - hypothetical protein, at 418,067 to 419,410
_RS01980
AMB_RS01985: AMB_RS01985 - hypothetical protein, at 419,413 to 419,850
_RS01985
AMB_RS01990: AMB_RS01990 - hypothetical protein, at 419,880 to 420,230
_RS01990
AMB_RS01995: AMB_RS01995 - DUF1833 domain-containing protein, at 420,223 to 420,747
_RS01995
AMB_RS02000: AMB_RS02000 - hypothetical protein, at 420,848 to 421,243
_RS02000
AMB_RS02005: AMB_RS02005 - hypothetical protein, at 421,240 to 423,567
_RS02005
Position (kb) 420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 419.223 kb on - strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.255 kb on + strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.256 kb on - strand, within AMB_RS01980 at 419.343 kb on - strand at 419.343 kb on - strand at 419.343 kb on - strand at 419.343 kb on - strand at 419.546 kb on - strand, within AMB_RS01985 at 419.752 kb on + strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.753 kb on - strand, within AMB_RS01985 at 419.831 kb on + strand at 419.832 kb on - strand at 419.832 kb on - strand at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.925 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.992 kb on + strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 419.993 kb on - strand, within AMB_RS01990 at 420.572 kb on - strand, within AMB_RS01995 at 420.572 kb on - strand, within AMB_RS01995 at 420.572 kb on - strand, within AMB_RS01995 at 420.712 kb on + strand at 420.712 kb on + strand at 420.712 kb on + strand at 420.713 kb on - strand at 420.713 kb on - strand at 420.774 kb on - strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.788 kb on + strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.789 kb on - strand at 420.866 kb on + strand at 420.868 kb on + strand at 420.868 kb on + strand at 421.253 kb on + strand at 421.253 kb on + strand at 421.253 kb on + strand at 421.253 kb on + strand at 421.253 kb on + strand at 421.253 kb on + strand at 421.254 kb on - strand at 421.254 kb on - strand at 421.254 kb on - strand at 421.254 kb on - strand at 421.254 kb on - strand at 421.254 kb on - strand at 421.254 kb on - strand at 421.257 kb on + strand at 421.257 kb on + strand at 421.257 kb on + strand at 421.257 kb on + strand at 421.258 kb on - strand at 421.258 kb on - strand at 421.258 kb on - strand at 421.258 kb on - strand at 421.258 kb on - strand at 421.420 kb on + strand at 421.420 kb on + strand at 421.420 kb on + strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.421 kb on - strand at 421.556 kb on - strand, within AMB_RS02005 at 421.556 kb on - strand, within AMB_RS02005 at 421.556 kb on - strand, within AMB_RS02005 at 421.588 kb on + strand, within AMB_RS02005 at 421.588 kb on + strand, within AMB_RS02005 at 421.588 kb on + strand, within AMB_RS02005 at 421.589 kb on - strand, within AMB_RS02005 at 421.589 kb on - strand, within AMB_RS02005 at 421.589 kb on - strand, within AMB_RS02005 at 421.589 kb on - strand, within AMB_RS02005 at 421.590 kb on + strand, within AMB_RS02005 at 421.659 kb on + strand, within AMB_RS02005 at 421.660 kb on - strand, within AMB_RS02005
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 419,223 - AMB_RS01980 0.86 -0.6 419,255 + AMB_RS01980 0.88 -1.8 419,255 + AMB_RS01980 0.88 -0.6 419,255 + AMB_RS01980 0.88 -0.1 419,255 + AMB_RS01980 0.88 -0.3 419,255 + AMB_RS01980 0.88 -0.1 419,255 + AMB_RS01980 0.88 -0.2 419,255 + AMB_RS01980 0.88 +0.3 419,255 + AMB_RS01980 0.88 -0.0 419,255 + AMB_RS01980 0.88 -0.3 419,256 - AMB_RS01980 0.88 +0.3 419,256 - AMB_RS01980 0.88 -1.8 419,256 - AMB_RS01980 0.88 +0.1 419,256 - AMB_RS01980 0.88 -1.5 419,256 - AMB_RS01980 0.88 +0.3 419,256 - AMB_RS01980 0.88 +0.9 419,343 - +0.3 419,343 - +0.1 419,343 - -0.4 419,343 - -0.3 419,546 - AMB_RS01985 0.30 +0.7 419,752 + AMB_RS01985 0.77 -0.7 419,753 - AMB_RS01985 0.78 +0.7 419,753 - AMB_RS01985 0.78 -0.6 419,753 - AMB_RS01985 0.78 -2.0 419,753 - AMB_RS01985 0.78 -0.5 419,831 + -2.2 419,832 - -0.9 419,832 - +0.1 419,925 + AMB_RS01990 0.13 -1.8 419,925 + AMB_RS01990 0.13 -0.3 419,925 + AMB_RS01990 0.13 +1.7 419,925 + AMB_RS01990 0.13 -0.9 419,925 + AMB_RS01990 0.13 -0.9 419,925 + AMB_RS01990 0.13 +0.1 419,925 + AMB_RS01990 0.13 +0.1 419,992 + AMB_RS01990 0.32 -1.3 419,992 + AMB_RS01990 0.32 +0.6 419,992 + AMB_RS01990 0.32 +0.1 419,992 + AMB_RS01990 0.32 +0.5 419,992 + AMB_RS01990 0.32 +0.1 419,993 - AMB_RS01990 0.32 +0.2 419,993 - AMB_RS01990 0.32 +0.1 419,993 - AMB_RS01990 0.32 -0.1 419,993 - AMB_RS01990 0.32 -1.3 419,993 - AMB_RS01990 0.32 +0.4 419,993 - AMB_RS01990 0.32 -0.8 419,993 - AMB_RS01990 0.32 -1.3 419,993 - AMB_RS01990 0.32 -0.6 420,572 - AMB_RS01995 0.66 -1.3 420,572 - AMB_RS01995 0.66 -0.6 420,572 - AMB_RS01995 0.66 +0.8 420,712 + +0.0 420,712 + +0.7 420,712 + -1.5 420,713 - -1.2 420,713 - -0.3 420,774 - +0.2 420,788 + +0.1 420,788 + -3.2 420,788 + -0.9 420,788 + -1.0 420,788 + -0.3 420,788 + +0.3 420,788 + -0.9 420,788 + +0.1 420,788 + -2.3 420,788 + -0.4 420,788 + -1.5 420,788 + -0.3 420,788 + +0.1 420,788 + +0.2 420,788 + -1.1 420,788 + +1.0 420,788 + +0.8 420,788 + +0.1 420,788 + +0.3 420,788 + +0.2 420,788 + +0.7 420,789 - -2.3 420,789 - -0.4 420,789 - -0.6 420,789 - +0.1 420,789 - +0.7 420,789 - -0.2 420,789 - -1.5 420,789 - -1.1 420,789 - -0.3 420,789 - -0.9 420,789 - +0.1 420,789 - -0.5 420,789 - +0.7 420,789 - -1.3 420,789 - +0.0 420,789 - -0.1 420,866 + +0.3 420,868 + +0.2 420,868 + +0.7 421,253 + +0.1 421,253 + +0.0 421,253 + -0.3 421,253 + +0.7 421,253 + +0.1 421,253 + +1.2 421,254 - +0.1 421,254 - -0.2 421,254 - -0.1 421,254 - -0.1 421,254 - -0.6 421,254 - -0.5 421,254 - -1.5 421,257 + +0.4 421,257 + -0.3 421,257 + -0.0 421,257 + -0.9 421,258 - -0.8 421,258 - -3.1 421,258 - -1.3 421,258 - -0.9 421,258 - -0.4 421,420 + +0.1 421,420 + -0.9 421,420 + -1.3 421,421 - -0.0 421,421 - -1.5 421,421 - +0.3 421,421 - -0.9 421,421 - +0.2 421,421 - -1.1 421,421 - -2.1 421,556 - AMB_RS02005 0.14 -0.9 421,556 - AMB_RS02005 0.14 -1.3 421,556 - AMB_RS02005 0.14 +0.1 421,588 + AMB_RS02005 0.15 +1.0 421,588 + AMB_RS02005 0.15 -0.1 421,588 + AMB_RS02005 0.15 +0.7 421,589 - AMB_RS02005 0.15 -0.8 421,589 - AMB_RS02005 0.15 -0.0 421,589 - AMB_RS02005 0.15 -2.2 421,589 - AMB_RS02005 0.15 +0.7 421,590 + AMB_RS02005 0.15 -2.8 421,659 + AMB_RS02005 0.18 +0.2 421,660 - AMB_RS02005 0.18 +1.7
Or see this region's nucleotide sequence