Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01900 and AMB_RS01905 are separated by 8 nucleotides AMB_RS01905 and AMB_RS01910 are separated by 12 nucleotides AMB_RS01910 and AMB_RS01915 are separated by 14 nucleotides
AMB_RS01900: AMB_RS01900 - phage portal protein, at 404,277 to 405,707
_RS01900
AMB_RS01905: AMB_RS01905 - S49 family peptidase, at 405,716 to 406,948
_RS01905
AMB_RS01910: AMB_RS01910 - head decoration protein, at 406,961 to 407,350
_RS01910
AMB_RS01915: AMB_RS01915 - minor capsid protein E, at 407,365 to 408,387
_RS01915
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 404.823 kb on + strand, within AMB_RS01900 at 404.824 kb on - strand, within AMB_RS01900 at 404.997 kb on + strand, within AMB_RS01900 at 404.998 kb on - strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.039 kb on + strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.040 kb on - strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.142 kb on + strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.143 kb on - strand, within AMB_RS01900 at 405.204 kb on + strand, within AMB_RS01900 at 405.204 kb on + strand, within AMB_RS01900 at 405.204 kb on + strand, within AMB_RS01900 at 405.205 kb on - strand, within AMB_RS01900 at 405.205 kb on - strand, within AMB_RS01900 at 405.262 kb on - strand, within AMB_RS01900 at 405.262 kb on - strand, within AMB_RS01900 at 405.297 kb on + strand, within AMB_RS01900 at 405.297 kb on + strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.298 kb on - strand, within AMB_RS01900 at 405.403 kb on + strand, within AMB_RS01900 at 405.403 kb on + strand, within AMB_RS01900 at 405.404 kb on - strand, within AMB_RS01900 at 405.404 kb on - strand, within AMB_RS01900 at 405.444 kb on + strand, within AMB_RS01900 at 405.591 kb on + strand at 405.591 kb on + strand at 405.592 kb on - strand at 405.705 kb on + strand at 405.706 kb on - strand at 405.706 kb on - strand at 405.706 kb on - strand at 405.750 kb on - strand at 405.750 kb on - strand at 405.962 kb on + strand, within AMB_RS01905 at 405.963 kb on - strand, within AMB_RS01905 at 405.963 kb on - strand, within AMB_RS01905 at 406.155 kb on - strand, within AMB_RS01905 at 406.155 kb on - strand, within AMB_RS01905 at 406.155 kb on - strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.184 kb on + strand, within AMB_RS01905 at 406.185 kb on - strand, within AMB_RS01905 at 406.185 kb on - strand, within AMB_RS01905 at 406.376 kb on + strand, within AMB_RS01905 at 406.376 kb on + strand, within AMB_RS01905 at 406.377 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.686 kb on + strand, within AMB_RS01905 at 406.687 kb on - strand, within AMB_RS01905 at 406.687 kb on - strand, within AMB_RS01905 at 406.709 kb on + strand, within AMB_RS01905 at 406.710 kb on - strand, within AMB_RS01905 at 406.946 kb on + strand at 406.946 kb on + strand at 406.946 kb on + strand at 406.946 kb on + strand at 406.946 kb on + strand at 406.947 kb on - strand at 406.947 kb on - strand at 407.024 kb on + strand, within AMB_RS01910 at 407.024 kb on + strand, within AMB_RS01910 at 407.024 kb on + strand, within AMB_RS01910 at 407.025 kb on - strand, within AMB_RS01910 at 407.449 kb on + strand at 407.449 kb on + strand at 407.449 kb on + strand at 407.449 kb on + strand at 407.449 kb on + strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.451 kb on + strand at 407.451 kb on + strand at 407.452 kb on - strand at 407.452 kb on - strand at 407.452 kb on - strand at 407.821 kb on + strand, within AMB_RS01915 at 407.822 kb on - strand, within AMB_RS01915 at 407.822 kb on - strand, within AMB_RS01915 at 407.828 kb on - strand, within AMB_RS01915 at 407.939 kb on + strand, within AMB_RS01915 at 407.940 kb on - strand, within AMB_RS01915 at 407.940 kb on - strand, within AMB_RS01915 at 407.940 kb on - strand, within AMB_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 404,823 + AMB_RS01900 0.38 -0.9 404,824 - AMB_RS01900 0.38 +1.7 404,997 + AMB_RS01900 0.50 +0.7 404,998 - AMB_RS01900 0.50 +0.2 405,039 + AMB_RS01900 0.53 +0.9 405,039 + AMB_RS01900 0.53 +1.2 405,039 + AMB_RS01900 0.53 -0.9 405,039 + AMB_RS01900 0.53 +0.1 405,039 + AMB_RS01900 0.53 -0.9 405,040 - AMB_RS01900 0.53 -1.5 405,040 - AMB_RS01900 0.53 +0.7 405,040 - AMB_RS01900 0.53 +0.3 405,040 - AMB_RS01900 0.53 -2.6 405,040 - AMB_RS01900 0.53 -0.1 405,142 + AMB_RS01900 0.60 +0.3 405,142 + AMB_RS01900 0.60 -2.8 405,142 + AMB_RS01900 0.60 -0.3 405,142 + AMB_RS01900 0.60 +1.7 405,143 - AMB_RS01900 0.61 -0.1 405,143 - AMB_RS01900 0.61 -1.6 405,143 - AMB_RS01900 0.61 -1.5 405,143 - AMB_RS01900 0.61 +0.1 405,143 - AMB_RS01900 0.61 -2.1 405,204 + AMB_RS01900 0.65 -1.9 405,204 + AMB_RS01900 0.65 -0.4 405,204 + AMB_RS01900 0.65 +0.2 405,205 - AMB_RS01900 0.65 +0.1 405,205 - AMB_RS01900 0.65 +0.4 405,262 - AMB_RS01900 0.69 +0.7 405,262 - AMB_RS01900 0.69 -0.6 405,297 + AMB_RS01900 0.71 +0.2 405,297 + AMB_RS01900 0.71 +0.7 405,298 - AMB_RS01900 0.71 -2.5 405,298 - AMB_RS01900 0.71 -1.6 405,298 - AMB_RS01900 0.71 -3.1 405,298 - AMB_RS01900 0.71 -0.4 405,403 + AMB_RS01900 0.79 +0.7 405,403 + AMB_RS01900 0.79 -1.6 405,404 - AMB_RS01900 0.79 -2.3 405,404 - AMB_RS01900 0.79 -0.6 405,444 + AMB_RS01900 0.82 -0.0 405,591 + +0.2 405,591 + +0.1 405,592 - -1.1 405,705 + -0.9 405,706 - +0.2 405,706 - +0.1 405,706 - -0.3 405,750 - -0.2 405,750 - -0.9 405,962 + AMB_RS01905 0.20 -0.6 405,963 - AMB_RS01905 0.20 -1.6 405,963 - AMB_RS01905 0.20 -0.3 406,155 - AMB_RS01905 0.36 -2.0 406,155 - AMB_RS01905 0.36 -1.8 406,155 - AMB_RS01905 0.36 +0.5 406,184 + AMB_RS01905 0.38 -0.3 406,184 + AMB_RS01905 0.38 -0.0 406,184 + AMB_RS01905 0.38 -1.5 406,184 + AMB_RS01905 0.38 +0.1 406,184 + AMB_RS01905 0.38 -1.0 406,184 + AMB_RS01905 0.38 -2.2 406,185 - AMB_RS01905 0.38 -1.1 406,185 - AMB_RS01905 0.38 -1.3 406,376 + AMB_RS01905 0.54 +0.5 406,376 + AMB_RS01905 0.54 -0.5 406,377 - AMB_RS01905 0.54 -0.9 406,455 - AMB_RS01905 0.60 +0.9 406,455 - AMB_RS01905 0.60 -0.6 406,455 - AMB_RS01905 0.60 -1.1 406,455 - AMB_RS01905 0.60 -1.3 406,686 + AMB_RS01905 0.79 +0.1 406,687 - AMB_RS01905 0.79 -2.4 406,687 - AMB_RS01905 0.79 -0.8 406,709 + AMB_RS01905 0.81 -0.4 406,710 - AMB_RS01905 0.81 +0.0 406,946 + -0.9 406,946 + -0.9 406,946 + -0.9 406,946 + +0.1 406,946 + -2.0 406,947 - -1.1 406,947 - +0.8 407,024 + AMB_RS01910 0.16 -0.9 407,024 + AMB_RS01910 0.16 +0.1 407,024 + AMB_RS01910 0.16 -2.2 407,025 - AMB_RS01910 0.16 +0.7 407,449 + +0.2 407,449 + -1.5 407,449 + -2.5 407,449 + -0.4 407,449 + -0.3 407,450 - -0.0 407,450 - -2.3 407,450 - +0.7 407,450 - +0.2 407,450 - -1.6 407,450 - +0.1 407,451 + +0.2 407,451 + -0.2 407,452 - -1.5 407,452 - +2.7 407,452 - -0.7 407,821 + AMB_RS01915 0.45 -0.9 407,822 - AMB_RS01915 0.45 +0.1 407,822 - AMB_RS01915 0.45 -0.3 407,828 - AMB_RS01915 0.45 -0.0 407,939 + AMB_RS01915 0.56 +0.6 407,940 - AMB_RS01915 0.56 +0.8 407,940 - AMB_RS01915 0.56 -0.3 407,940 - AMB_RS01915 0.56 +0.2
Or see this region's nucleotide sequence