Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01715

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01710 and AMB_RS01715 overlap by 1 nucleotidesAMB_RS01715 and AMB_RS01720 are separated by 64 nucleotides AMB_RS01710: AMB_RS01710 - glycosyl transferase, at 375,583 to 376,782 _RS01710 AMB_RS01715: AMB_RS01715 - glycosyltransferase family 9 protein, at 376,782 to 377,711 _RS01715 AMB_RS01720: AMB_RS01720 - threonine--tRNA ligase, at 377,776 to 379,692 _RS01720 Position (kb) 376 377 378Strain fitness (log2 ratio) -1 0 1at 377.730 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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377,730 + +1.7

Or see this region's nucleotide sequence