Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01670 and AMB_RS01675 overlap by 4 nucleotides AMB_RS01675 and AMB_RS01680 overlap by 1 nucleotides AMB_RS01680 and AMB_RS01685 are separated by 4 nucleotides AMB_RS01685 and AMB_RS01690 overlap by 4 nucleotides
AMB_RS01670: AMB_RS01670 - MCE family protein, at 369,318 to 370,280
_RS01670
AMB_RS01675: AMB_RS01675 - ABC transporter ATP-binding protein, at 370,277 to 371,104
_RS01675
AMB_RS01680: AMB_RS01680 - ABC transporter permease, at 371,104 to 371,919
_RS01680
AMB_RS01685: AMB_RS01685 - anti-sigma factor antagonist, at 371,924 to 372,250
_RS01685
AMB_RS01690: AMB_RS01690 - serine phosphatase, at 372,247 to 373,914
_RS01690
Position (kb) 371
372 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 370.129 kb on + strand, within AMB_RS01670 at 370.129 kb on + strand, within AMB_RS01670 at 370.130 kb on - strand, within AMB_RS01670 at 370.162 kb on + strand, within AMB_RS01670 at 370.162 kb on + strand, within AMB_RS01670 at 370.162 kb on + strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.163 kb on - strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.165 kb on + strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.166 kb on - strand, within AMB_RS01670 at 370.259 kb on - strand at 370.259 kb on - strand at 370.259 kb on - strand at 370.259 kb on - strand at 370.336 kb on - strand at 370.336 kb on - strand at 370.768 kb on + strand, within AMB_RS01675 at 370.769 kb on - strand, within AMB_RS01675 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.364 kb on - strand, within AMB_RS01680 at 371.364 kb on - strand, within AMB_RS01680 at 371.364 kb on - strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.655 kb on - strand, within AMB_RS01680 at 371.655 kb on - strand, within AMB_RS01680 at 371.655 kb on - strand, within AMB_RS01680 at 371.802 kb on - strand, within AMB_RS01680 at 372.060 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.337 kb on + strand at 372.338 kb on - strand at 372.338 kb on - strand at 372.396 kb on + strand at 372.397 kb on - strand at 372.426 kb on + strand, within AMB_RS01690 at 372.494 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.858 kb on - strand, within AMB_RS01690 at 372.858 kb on - strand, within AMB_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 370,129 + AMB_RS01670 0.84 -1.5 370,129 + AMB_RS01670 0.84 -1.7 370,130 - AMB_RS01670 0.84 -1.3 370,162 + AMB_RS01670 0.88 +0.3 370,162 + AMB_RS01670 0.88 -0.7 370,162 + AMB_RS01670 0.88 +0.2 370,163 - AMB_RS01670 0.88 -0.7 370,163 - AMB_RS01670 0.88 -1.1 370,163 - AMB_RS01670 0.88 -0.9 370,163 - AMB_RS01670 0.88 +0.1 370,163 - AMB_RS01670 0.88 +0.1 370,165 + AMB_RS01670 0.88 +0.4 370,165 + AMB_RS01670 0.88 -3.2 370,165 + AMB_RS01670 0.88 +0.4 370,165 + AMB_RS01670 0.88 -0.0 370,165 + AMB_RS01670 0.88 +0.4 370,166 - AMB_RS01670 0.88 -0.7 370,166 - AMB_RS01670 0.88 +0.3 370,166 - AMB_RS01670 0.88 +0.0 370,166 - AMB_RS01670 0.88 -0.3 370,259 - +0.7 370,259 - -0.9 370,259 - -0.4 370,259 - +0.3 370,336 - -0.7 370,336 - -0.2 370,768 + AMB_RS01675 0.59 +0.1 370,769 - AMB_RS01675 0.59 -0.7 371,327 + AMB_RS01680 0.27 -0.8 371,327 + AMB_RS01680 0.27 -1.3 371,327 + AMB_RS01680 0.27 -2.2 371,327 + AMB_RS01680 0.27 +0.5 371,327 + AMB_RS01680 0.27 -0.3 371,327 + AMB_RS01680 0.27 +0.2 371,327 + AMB_RS01680 0.27 -1.5 371,328 - AMB_RS01680 0.27 +0.6 371,328 - AMB_RS01680 0.27 -1.1 371,328 - AMB_RS01680 0.27 +1.4 371,328 - AMB_RS01680 0.27 +0.4 371,363 + AMB_RS01680 0.32 -0.3 371,363 + AMB_RS01680 0.32 +0.1 371,363 + AMB_RS01680 0.32 +0.4 371,363 + AMB_RS01680 0.32 +0.7 371,364 - AMB_RS01680 0.32 -1.3 371,364 - AMB_RS01680 0.32 -0.3 371,364 - AMB_RS01680 0.32 -0.9 371,654 + AMB_RS01680 0.67 -1.1 371,654 + AMB_RS01680 0.67 -0.7 371,654 + AMB_RS01680 0.67 -0.1 371,654 + AMB_RS01680 0.67 -0.9 371,655 - AMB_RS01680 0.68 +0.1 371,655 - AMB_RS01680 0.68 +0.7 371,655 - AMB_RS01680 0.68 +0.7 371,802 - AMB_RS01680 0.86 -0.7 372,060 + AMB_RS01685 0.42 -0.1 372,099 + AMB_RS01685 0.54 -0.1 372,099 + AMB_RS01685 0.54 -0.9 372,099 + AMB_RS01685 0.54 +0.3 372,099 + AMB_RS01685 0.54 -2.5 372,100 - AMB_RS01685 0.54 +0.2 372,100 - AMB_RS01685 0.54 -1.3 372,100 - AMB_RS01685 0.54 -0.3 372,100 - AMB_RS01685 0.54 -2.7 372,337 + -1.8 372,338 - +0.1 372,338 - -1.5 372,396 + +0.0 372,397 - -0.1 372,426 + AMB_RS01690 0.11 +0.2 372,494 + AMB_RS01690 0.15 -0.7 372,857 + AMB_RS01690 0.37 +0.3 372,857 + AMB_RS01690 0.37 +0.7 372,857 + AMB_RS01690 0.37 +0.1 372,857 + AMB_RS01690 0.37 +1.3 372,857 + AMB_RS01690 0.37 -1.5 372,858 - AMB_RS01690 0.37 -1.3 372,858 - AMB_RS01690 0.37 +0.3
Or see this region's nucleotide sequence