Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01670

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01660 and AMB_RS01665 overlap by 4 nucleotidesAMB_RS01665 and AMB_RS01670 are separated by 4 nucleotidesAMB_RS01670 and AMB_RS01675 overlap by 4 nucleotidesAMB_RS01675 and AMB_RS01680 overlap by 1 nucleotides AMB_RS01660: AMB_RS01660 - class I SAM-dependent RNA methyltransferase, at 367,407 to 368,723 _RS01660 AMB_RS01665: AMB_RS01665 - ABC transporter, at 368,720 to 369,313 _RS01665 AMB_RS01670: AMB_RS01670 - MCE family protein, at 369,318 to 370,280 _RS01670 AMB_RS01675: AMB_RS01675 - ABC transporter ATP-binding protein, at 370,277 to 371,104 _RS01675 AMB_RS01680: AMB_RS01680 - ABC transporter permease, at 371,104 to 371,919 _RS01680 Position (kb) 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1at 368.838 kb on + strand, within AMB_RS01665at 368.838 kb on + strand, within AMB_RS01665at 368.838 kb on + strand, within AMB_RS01665at 368.838 kb on + strand, within AMB_RS01665at 368.838 kb on + strand, within AMB_RS01665at 368.838 kb on + strand, within AMB_RS01665at 368.838 kb on + strand, within AMB_RS01665at 368.839 kb on - strand, within AMB_RS01665at 368.839 kb on - strand, within AMB_RS01665at 368.839 kb on - strand, within AMB_RS01665at 368.839 kb on - strand, within AMB_RS01665at 369.021 kb on + strand, within AMB_RS01665at 369.021 kb on + strand, within AMB_RS01665at 369.022 kb on - strand, within AMB_RS01665at 369.075 kb on + strand, within AMB_RS01665at 369.076 kb on - strand, within AMB_RS01665at 369.076 kb on - strand, within AMB_RS01665at 369.076 kb on - strand, within AMB_RS01665at 369.076 kb on - strand, within AMB_RS01665at 369.076 kb on - strand, within AMB_RS01665at 369.081 kb on + strand, within AMB_RS01665at 369.081 kb on + strand, within AMB_RS01665at 369.081 kb on + strand, within AMB_RS01665at 369.081 kb on + strand, within AMB_RS01665at 369.081 kb on + strand, within AMB_RS01665at 369.082 kb on - strand, within AMB_RS01665at 369.082 kb on - strand, within AMB_RS01665at 369.082 kb on - strand, within AMB_RS01665at 369.082 kb on - strand, within AMB_RS01665at 369.218 kb on + strand, within AMB_RS01665at 369.228 kb on + strand, within AMB_RS01665at 369.229 kb on - strand, within AMB_RS01665at 369.296 kb on + strandat 369.319 kb on + strandat 369.320 kb on - strandat 369.431 kb on + strand, within AMB_RS01670at 369.431 kb on + strand, within AMB_RS01670at 369.431 kb on + strand, within AMB_RS01670at 369.432 kb on - strand, within AMB_RS01670at 369.432 kb on - strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.433 kb on + strand, within AMB_RS01670at 369.434 kb on - strand, within AMB_RS01670at 369.434 kb on - strand, within AMB_RS01670at 369.434 kb on - strand, within AMB_RS01670at 369.434 kb on - strand, within AMB_RS01670at 369.434 kb on - strand, within AMB_RS01670at 369.434 kb on - strand, within AMB_RS01670at 369.935 kb on + strand, within AMB_RS01670at 369.935 kb on + strand, within AMB_RS01670at 370.129 kb on + strand, within AMB_RS01670at 370.129 kb on + strand, within AMB_RS01670at 370.130 kb on - strand, within AMB_RS01670at 370.162 kb on + strand, within AMB_RS01670at 370.162 kb on + strand, within AMB_RS01670at 370.162 kb on + strand, within AMB_RS01670at 370.163 kb on - strand, within AMB_RS01670at 370.163 kb on - strand, within AMB_RS01670at 370.163 kb on - strand, within AMB_RS01670at 370.163 kb on - strand, within AMB_RS01670at 370.163 kb on - strand, within AMB_RS01670at 370.165 kb on + strand, within AMB_RS01670at 370.165 kb on + strand, within AMB_RS01670at 370.165 kb on + strand, within AMB_RS01670at 370.165 kb on + strand, within AMB_RS01670at 370.165 kb on + strand, within AMB_RS01670at 370.166 kb on - strand, within AMB_RS01670at 370.166 kb on - strand, within AMB_RS01670at 370.166 kb on - strand, within AMB_RS01670at 370.166 kb on - strand, within AMB_RS01670at 370.259 kb on - strandat 370.259 kb on - strandat 370.259 kb on - strandat 370.259 kb on - strandat 370.336 kb on - strandat 370.336 kb on - strandat 370.768 kb on + strand, within AMB_RS01675at 370.769 kb on - strand, within AMB_RS01675

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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368,838 + AMB_RS01665 0.20 -0.7
368,838 + AMB_RS01665 0.20 -0.9
368,838 + AMB_RS01665 0.20 -1.3
368,838 + AMB_RS01665 0.20 -0.3
368,838 + AMB_RS01665 0.20 -0.3
368,838 + AMB_RS01665 0.20 -0.3
368,838 + AMB_RS01665 0.20 -0.2
368,839 - AMB_RS01665 0.20 +0.1
368,839 - AMB_RS01665 0.20 -2.5
368,839 - AMB_RS01665 0.20 -0.6
368,839 - AMB_RS01665 0.20 -2.7
369,021 + AMB_RS01665 0.51 +0.7
369,021 + AMB_RS01665 0.51 +0.3
369,022 - AMB_RS01665 0.51 +0.4
369,075 + AMB_RS01665 0.60 +0.6
369,076 - AMB_RS01665 0.60 +0.4
369,076 - AMB_RS01665 0.60 -2.3
369,076 - AMB_RS01665 0.60 -0.7
369,076 - AMB_RS01665 0.60 +0.3
369,076 - AMB_RS01665 0.60 +0.2
369,081 + AMB_RS01665 0.61 -0.3
369,081 + AMB_RS01665 0.61 -1.0
369,081 + AMB_RS01665 0.61 -0.8
369,081 + AMB_RS01665 0.61 +0.3
369,081 + AMB_RS01665 0.61 -0.7
369,082 - AMB_RS01665 0.61 -1.1
369,082 - AMB_RS01665 0.61 -0.9
369,082 - AMB_RS01665 0.61 -2.2
369,082 - AMB_RS01665 0.61 -0.7
369,218 + AMB_RS01665 0.84 +0.6
369,228 + AMB_RS01665 0.86 +0.1
369,229 - AMB_RS01665 0.86 -1.1
369,296 + +0.0
369,319 + +0.2
369,320 - +0.1
369,431 + AMB_RS01670 0.12 +0.4
369,431 + AMB_RS01670 0.12 +0.2
369,431 + AMB_RS01670 0.12 -1.3
369,432 - AMB_RS01670 0.12 -1.9
369,432 - AMB_RS01670 0.12 +0.3
369,433 + AMB_RS01670 0.12 +0.6
369,433 + AMB_RS01670 0.12 +1.0
369,433 + AMB_RS01670 0.12 +0.7
369,433 + AMB_RS01670 0.12 -1.3
369,433 + AMB_RS01670 0.12 +0.7
369,433 + AMB_RS01670 0.12 -0.9
369,433 + AMB_RS01670 0.12 -0.2
369,433 + AMB_RS01670 0.12 +0.4
369,433 + AMB_RS01670 0.12 -0.7
369,433 + AMB_RS01670 0.12 +0.3
369,434 - AMB_RS01670 0.12 +0.7
369,434 - AMB_RS01670 0.12 -0.7
369,434 - AMB_RS01670 0.12 -0.0
369,434 - AMB_RS01670 0.12 -0.0
369,434 - AMB_RS01670 0.12 -0.7
369,434 - AMB_RS01670 0.12 +0.7
369,935 + AMB_RS01670 0.64 -0.7
369,935 + AMB_RS01670 0.64 +0.1
370,129 + AMB_RS01670 0.84 -1.5
370,129 + AMB_RS01670 0.84 -1.7
370,130 - AMB_RS01670 0.84 -1.3
370,162 + AMB_RS01670 0.88 +0.3
370,162 + AMB_RS01670 0.88 -0.7
370,162 + AMB_RS01670 0.88 +0.2
370,163 - AMB_RS01670 0.88 -0.7
370,163 - AMB_RS01670 0.88 -1.1
370,163 - AMB_RS01670 0.88 -0.9
370,163 - AMB_RS01670 0.88 +0.1
370,163 - AMB_RS01670 0.88 +0.1
370,165 + AMB_RS01670 0.88 +0.4
370,165 + AMB_RS01670 0.88 -3.2
370,165 + AMB_RS01670 0.88 +0.4
370,165 + AMB_RS01670 0.88 -0.0
370,165 + AMB_RS01670 0.88 +0.4
370,166 - AMB_RS01670 0.88 -0.7
370,166 - AMB_RS01670 0.88 +0.3
370,166 - AMB_RS01670 0.88 +0.0
370,166 - AMB_RS01670 0.88 -0.3
370,259 - +0.7
370,259 - -0.9
370,259 - -0.4
370,259 - +0.3
370,336 - -0.7
370,336 - -0.2
370,768 + AMB_RS01675 0.59 +0.1
370,769 - AMB_RS01675 0.59 -0.7

Or see this region's nucleotide sequence