Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01430 and AMB_RS01435 are separated by 57 nucleotides AMB_RS01435 and AMB_RS01440 are separated by 17 nucleotides AMB_RS01440 and AMB_RS01445 are separated by 169 nucleotides
AMB_RS01430: AMB_RS01430 - hypothetical protein, at 312,689 to 312,892
_RS01430
AMB_RS01435: AMB_RS01435 - M23 family peptidase, at 312,950 to 313,864
_RS01435
AMB_RS01440: AMB_RS01440 - hypothetical protein, at 313,882 to 314,670
_RS01440
AMB_RS01445: AMB_RS01445 - hypothetical protein, at 314,840 to 318,310
_RS01445
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 312.910 kb on + strand at 312.927 kb on + strand at 312.997 kb on + strand at 312.997 kb on + strand at 312.997 kb on + strand at 312.998 kb on - strand at 313.155 kb on + strand, within AMB_RS01435 at 313.155 kb on + strand, within AMB_RS01435 at 313.155 kb on + strand, within AMB_RS01435 at 313.155 kb on + strand, within AMB_RS01435 at 313.155 kb on + strand, within AMB_RS01435 at 313.156 kb on - strand, within AMB_RS01435 at 313.156 kb on - strand, within AMB_RS01435 at 313.156 kb on - strand, within AMB_RS01435 at 313.156 kb on - strand, within AMB_RS01435 at 313.156 kb on - strand, within AMB_RS01435 at 313.156 kb on - strand, within AMB_RS01435 at 313.319 kb on - strand, within AMB_RS01435 at 313.319 kb on - strand, within AMB_RS01435 at 313.320 kb on + strand, within AMB_RS01435 at 313.320 kb on + strand, within AMB_RS01435 at 313.320 kb on + strand, within AMB_RS01435 at 313.320 kb on + strand, within AMB_RS01435 at 313.321 kb on - strand, within AMB_RS01435 at 313.321 kb on - strand, within AMB_RS01435 at 313.386 kb on + strand, within AMB_RS01435 at 313.841 kb on + strand at 313.841 kb on + strand at 313.842 kb on - strand at 313.842 kb on - strand at 313.842 kb on - strand at 313.842 kb on - strand at 313.864 kb on + strand at 313.865 kb on - strand at 313.865 kb on - strand at 313.865 kb on - strand at 313.865 kb on - strand at 313.865 kb on - strand at 313.883 kb on + strand at 313.883 kb on + strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.884 kb on - strand at 313.884 kb on - strand at 314.214 kb on + strand, within AMB_RS01440 at 314.214 kb on + strand, within AMB_RS01440 at 314.214 kb on + strand, within AMB_RS01440 at 314.214 kb on + strand, within AMB_RS01440 at 314.214 kb on + strand, within AMB_RS01440 at 314.214 kb on + strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.215 kb on - strand, within AMB_RS01440 at 314.216 kb on + strand, within AMB_RS01440 at 314.217 kb on - strand, within AMB_RS01440 at 314.217 kb on - strand, within AMB_RS01440 at 314.705 kb on + strand at 314.705 kb on + strand at 314.705 kb on + strand at 314.706 kb on - strand at 314.706 kb on - strand at 314.706 kb on - strand at 314.706 kb on - strand at 314.706 kb on - strand at 314.710 kb on + strand at 314.711 kb on - strand at 314.736 kb on + strand at 314.736 kb on + strand at 314.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 312,910 + +0.6 312,927 + +0.7 312,997 + +1.3 312,997 + -0.3 312,997 + +0.2 312,998 - -0.6 313,155 + AMB_RS01435 0.22 +0.2 313,155 + AMB_RS01435 0.22 +0.3 313,155 + AMB_RS01435 0.22 +0.8 313,155 + AMB_RS01435 0.22 -0.5 313,155 + AMB_RS01435 0.22 -0.7 313,156 - AMB_RS01435 0.23 +0.2 313,156 - AMB_RS01435 0.23 -1.1 313,156 - AMB_RS01435 0.23 +0.2 313,156 - AMB_RS01435 0.23 -2.9 313,156 - AMB_RS01435 0.23 -2.4 313,156 - AMB_RS01435 0.23 +0.7 313,319 - AMB_RS01435 0.40 +1.7 313,319 - AMB_RS01435 0.40 -0.3 313,320 + AMB_RS01435 0.40 -2.6 313,320 + AMB_RS01435 0.40 -1.8 313,320 + AMB_RS01435 0.40 +0.5 313,320 + AMB_RS01435 0.40 -0.6 313,321 - AMB_RS01435 0.41 -0.0 313,321 - AMB_RS01435 0.41 +0.3 313,386 + AMB_RS01435 0.48 +0.5 313,841 + -0.3 313,841 + +0.1 313,842 - -0.6 313,842 - -0.3 313,842 - +0.5 313,842 - -0.9 313,864 + +0.7 313,865 - +0.1 313,865 - -0.5 313,865 - +0.2 313,865 - -0.6 313,865 - -0.3 313,883 + +0.2 313,883 + +0.2 313,884 - -1.5 313,884 - -0.6 313,884 - -2.3 313,884 - +0.1 313,884 - +0.7 313,884 - +0.1 313,884 - -1.5 314,214 + AMB_RS01440 0.42 +0.2 314,214 + AMB_RS01440 0.42 -1.1 314,214 + AMB_RS01440 0.42 +0.7 314,214 + AMB_RS01440 0.42 -1.1 314,214 + AMB_RS01440 0.42 -0.5 314,214 + AMB_RS01440 0.42 -1.6 314,215 - AMB_RS01440 0.42 -0.3 314,215 - AMB_RS01440 0.42 -0.2 314,215 - AMB_RS01440 0.42 +0.1 314,215 - AMB_RS01440 0.42 +0.1 314,215 - AMB_RS01440 0.42 +1.3 314,215 - AMB_RS01440 0.42 -0.2 314,215 - AMB_RS01440 0.42 -0.9 314,215 - AMB_RS01440 0.42 -0.9 314,216 + AMB_RS01440 0.42 -0.3 314,217 - AMB_RS01440 0.42 -0.3 314,217 - AMB_RS01440 0.42 +0.5 314,705 + +0.7 314,705 + +0.4 314,705 + -0.4 314,706 - -0.4 314,706 - -1.5 314,706 - -0.3 314,706 - -0.9 314,706 - +0.5 314,710 + -1.6 314,711 - -0.3 314,736 + -0.6 314,736 + +0.1 314,736 + +0.4
Or see this region's nucleotide sequence