Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00895

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00890 and AMB_RS00895 are separated by 52 nucleotidesAMB_RS00895 and AMB_RS00900 overlap by 17 nucleotidesAMB_RS00900 and AMB_RS00905 overlap by 4 nucleotides AMB_RS00890: AMB_RS00890 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 201,292 to 202,713 _RS00890 AMB_RS00895: AMB_RS00895 - benzoyl-CoA 2,3-epoxidase subunit BoxA, at 202,766 to 203,947 _RS00895 AMB_RS00900: AMB_RS00900 - acyl-CoA thioesterase, at 203,931 to 204,407 _RS00900 AMB_RS00905: AMB_RS00905 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 204,404 to 205,189 _RS00905 Position (kb) 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.772 kb on + strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.943 kb on + strand, within AMB_RS00890at 201.944 kb on - strand, within AMB_RS00890at 202.183 kb on + strand, within AMB_RS00890at 202.219 kb on + strand, within AMB_RS00890at 202.219 kb on + strand, within AMB_RS00890at 202.220 kb on - strand, within AMB_RS00890at 202.220 kb on - strand, within AMB_RS00890at 202.291 kb on + strand, within AMB_RS00890at 202.291 kb on + strand, within AMB_RS00890at 202.291 kb on + strand, within AMB_RS00890at 202.292 kb on - strand, within AMB_RS00890at 202.292 kb on - strand, within AMB_RS00890at 202.591 kb on + strandat 202.591 kb on + strandat 202.592 kb on - strandat 202.592 kb on - strandat 202.592 kb on - strandat 202.674 kb on + strandat 202.697 kb on - strandat 202.697 kb on - strandat 202.712 kb on - strandat 202.712 kb on - strandat 202.712 kb on - strandat 202.871 kb on + strandat 202.871 kb on + strandat 202.871 kb on + strandat 202.871 kb on + strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.883 kb on + strandat 202.883 kb on + strandat 203.135 kb on + strand, within AMB_RS00895at 203.136 kb on - strand, within AMB_RS00895at 203.147 kb on + strand, within AMB_RS00895at 203.147 kb on + strand, within AMB_RS00895at 203.189 kb on - strand, within AMB_RS00895at 203.189 kb on - strand, within AMB_RS00895at 203.189 kb on - strand, within AMB_RS00895at 203.339 kb on + strand, within AMB_RS00895at 203.340 kb on - strand, within AMB_RS00895at 203.340 kb on - strand, within AMB_RS00895at 203.340 kb on - strand, within AMB_RS00895at 203.432 kb on + strand, within AMB_RS00895at 203.432 kb on + strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.654 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.738 kb on + strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.739 kb on - strand, within AMB_RS00895at 203.927 kb on + strandat 203.928 kb on - strandat 203.928 kb on - strandat 203.928 kb on - strandat 203.942 kb on + strandat 203.943 kb on - strandat 203.943 kb on - strandat 204.036 kb on + strand, within AMB_RS00900at 204.037 kb on - strand, within AMB_RS00900at 204.057 kb on + strand, within AMB_RS00900at 204.057 kb on + strand, within AMB_RS00900at 204.058 kb on - strand, within AMB_RS00900at 204.111 kb on + strand, within AMB_RS00900at 204.112 kb on - strand, within AMB_RS00900at 204.123 kb on - strand, within AMB_RS00900at 204.166 kb on - strand, within AMB_RS00900at 204.375 kb on + strandat 204.375 kb on + strandat 204.375 kb on + strandat 204.376 kb on - strandat 204.376 kb on - strandat 204.662 kb on + strand, within AMB_RS00905at 204.662 kb on + strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.663 kb on - strand, within AMB_RS00905at 204.664 kb on + strand, within AMB_RS00905

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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201,772 + AMB_RS00890 0.34 +0.3
201,773 - AMB_RS00890 0.34 -1.4
201,773 - AMB_RS00890 0.34 -0.1
201,773 - AMB_RS00890 0.34 -1.2
201,943 + AMB_RS00890 0.46 -0.9
201,944 - AMB_RS00890 0.46 -1.6
202,183 + AMB_RS00890 0.63 +0.1
202,219 + AMB_RS00890 0.65 +2.0
202,219 + AMB_RS00890 0.65 +2.5
202,220 - AMB_RS00890 0.65 -0.3
202,220 - AMB_RS00890 0.65 -2.5
202,291 + AMB_RS00890 0.70 +1.1
202,291 + AMB_RS00890 0.70 -0.6
202,291 + AMB_RS00890 0.70 +1.8
202,292 - AMB_RS00890 0.70 +0.4
202,292 - AMB_RS00890 0.70 +0.2
202,591 + +0.9
202,591 + +2.4
202,592 - +1.3
202,592 - +1.4
202,592 - +0.0
202,674 + +2.7
202,697 - +0.3
202,697 - -0.6
202,712 - -0.2
202,712 - +0.4
202,712 - +0.7
202,871 + +2.5
202,871 + +1.5
202,871 + -1.9
202,871 + -1.9
202,872 - +0.6
202,872 - -1.8
202,872 - -1.2
202,872 - -1.6
202,872 - +0.2
202,883 + +0.4
202,883 + -0.6
203,135 + AMB_RS00895 0.31 -0.1
203,136 - AMB_RS00895 0.31 -0.4
203,147 + AMB_RS00895 0.32 -1.4
203,147 + AMB_RS00895 0.32 -1.0
203,189 - AMB_RS00895 0.36 -1.4
203,189 - AMB_RS00895 0.36 -1.2
203,189 - AMB_RS00895 0.36 -0.5
203,339 + AMB_RS00895 0.48 +0.6
203,340 - AMB_RS00895 0.49 -0.8
203,340 - AMB_RS00895 0.49 -1.0
203,340 - AMB_RS00895 0.49 +0.8
203,432 + AMB_RS00895 0.56 +0.3
203,432 + AMB_RS00895 0.56 +0.8
203,433 - AMB_RS00895 0.56 -1.2
203,433 - AMB_RS00895 0.56 -3.1
203,433 - AMB_RS00895 0.56 +0.1
203,654 + AMB_RS00895 0.75 -0.2
203,738 + AMB_RS00895 0.82 +0.8
203,738 + AMB_RS00895 0.82 +1.8
203,738 + AMB_RS00895 0.82 +0.9
203,738 + AMB_RS00895 0.82 -0.8
203,738 + AMB_RS00895 0.82 +2.0
203,739 - AMB_RS00895 0.82 -0.4
203,739 - AMB_RS00895 0.82 -1.7
203,739 - AMB_RS00895 0.82 +0.2
203,739 - AMB_RS00895 0.82 -0.0
203,927 + -0.2
203,928 - +0.1
203,928 - -0.2
203,928 - -1.8
203,942 + +0.8
203,943 - +0.4
203,943 - -1.4
204,036 + AMB_RS00900 0.22 -1.2
204,037 - AMB_RS00900 0.22 -0.4
204,057 + AMB_RS00900 0.26 -1.7
204,057 + AMB_RS00900 0.26 +1.8
204,058 - AMB_RS00900 0.27 -0.5
204,111 + AMB_RS00900 0.38 +0.8
204,112 - AMB_RS00900 0.38 -0.7
204,123 - AMB_RS00900 0.40 -0.2
204,166 - AMB_RS00900 0.49 +0.8
204,375 + +0.7
204,375 + +0.8
204,375 + +0.2
204,376 - -0.2
204,376 - +0.2
204,662 + AMB_RS00905 0.33 +0.1
204,662 + AMB_RS00905 0.33 -0.3
204,663 - AMB_RS00905 0.33 +1.2
204,663 - AMB_RS00905 0.33 -0.8
204,664 + AMB_RS00905 0.33 +0.1

Or see this region's nucleotide sequence