Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00865

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00860 and AMB_RS00865 overlap by 4 nucleotidesAMB_RS00865 and AMB_RS00870 are separated by 200 nucleotidesAMB_RS00870 and AMB_RS00875 are separated by 10 nucleotides AMB_RS00860: AMB_RS00860 - NADH-quinone oxidoreductase subunit F, at 192,144 to 193,736 _RS00860 AMB_RS00865: AMB_RS00865 - formate dehydrogenase subunit alpha, at 193,733 to 196,408 _RS00865 AMB_RS00870: AMB_RS00870 - DUF4863 domain-containing protein, at 196,609 to 197,079 _RS00870 AMB_RS00875: AMB_RS00875 - alpha/beta hydrolase, at 197,090 to 197,878 _RS00875 Position (kb) 193 194 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.921 kb on + strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.922 kb on - strand, within AMB_RS00860at 192.927 kb on + strand, within AMB_RS00860at 192.928 kb on - strand, within AMB_RS00860at 192.942 kb on + strand, within AMB_RS00860at 192.957 kb on - strand, within AMB_RS00860at 192.957 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.030 kb on - strand, within AMB_RS00860at 193.104 kb on + strand, within AMB_RS00860at 193.104 kb on + strand, within AMB_RS00860at 193.104 kb on + strand, within AMB_RS00860at 193.105 kb on - strand, within AMB_RS00860at 193.105 kb on - strand, within AMB_RS00860at 193.105 kb on - strand, within AMB_RS00860at 193.148 kb on + strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.149 kb on - strand, within AMB_RS00860at 193.245 kb on + strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 193.246 kb on - strand, within AMB_RS00860at 194.414 kb on + strand, within AMB_RS00865at 194.415 kb on - strand, within AMB_RS00865at 194.415 kb on - strand, within AMB_RS00865at 194.415 kb on - strand, within AMB_RS00865at 194.717 kb on + strand, within AMB_RS00865at 194.717 kb on + strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.718 kb on - strand, within AMB_RS00865at 194.749 kb on + strand, within AMB_RS00865at 194.750 kb on - strand, within AMB_RS00865at 195.084 kb on - strand, within AMB_RS00865at 195.218 kb on + strand, within AMB_RS00865at 195.506 kb on - strand, within AMB_RS00865at 195.733 kb on + strand, within AMB_RS00865at 195.845 kb on + strand, within AMB_RS00865at 195.845 kb on + strand, within AMB_RS00865at 195.845 kb on + strand, within AMB_RS00865at 195.845 kb on + strand, within AMB_RS00865at 195.845 kb on + strand, within AMB_RS00865at 195.845 kb on + strand, within AMB_RS00865at 195.846 kb on - strand, within AMB_RS00865at 195.846 kb on - strand, within AMB_RS00865at 195.846 kb on - strand, within AMB_RS00865at 195.846 kb on - strand, within AMB_RS00865at 196.099 kb on + strand, within AMB_RS00865at 196.406 kb on + strandat 196.593 kb on - strandat 196.593 kb on - strandat 196.646 kb on + strandat 196.647 kb on - strandat 196.979 kb on - strand, within AMB_RS00870at 196.979 kb on - strand, within AMB_RS00870at 197.035 kb on + strandat 197.035 kb on + strandat 197.035 kb on + strandat 197.035 kb on + strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.144 kb on + strandat 197.144 kb on + strandat 197.145 kb on - strandat 197.276 kb on + strand, within AMB_RS00875at 197.276 kb on + strand, within AMB_RS00875at 197.276 kb on + strand, within AMB_RS00875at 197.291 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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192,921 + AMB_RS00860 0.49 -1.8
192,921 + AMB_RS00860 0.49 +0.4
192,921 + AMB_RS00860 0.49 +0.3
192,921 + AMB_RS00860 0.49 +0.3
192,921 + AMB_RS00860 0.49 -1.9
192,921 + AMB_RS00860 0.49 +0.4
192,921 + AMB_RS00860 0.49 +0.3
192,922 - AMB_RS00860 0.49 +0.3
192,922 - AMB_RS00860 0.49 -0.2
192,922 - AMB_RS00860 0.49 -0.5
192,922 - AMB_RS00860 0.49 -0.2
192,927 + AMB_RS00860 0.49 -0.8
192,928 - AMB_RS00860 0.49 -1.2
192,942 + AMB_RS00860 0.50 +0.8
192,957 - AMB_RS00860 0.51 +1.8
192,957 - AMB_RS00860 0.51 +0.8
193,030 - AMB_RS00860 0.56 -0.1
193,030 - AMB_RS00860 0.56 -0.5
193,030 - AMB_RS00860 0.56 +1.8
193,030 - AMB_RS00860 0.56 -0.4
193,030 - AMB_RS00860 0.56 -1.2
193,104 + AMB_RS00860 0.60 +0.4
193,104 + AMB_RS00860 0.60 -1.4
193,104 + AMB_RS00860 0.60 -0.3
193,105 - AMB_RS00860 0.60 -0.2
193,105 - AMB_RS00860 0.60 +0.1
193,105 - AMB_RS00860 0.60 +0.2
193,148 + AMB_RS00860 0.63 -2.0
193,149 - AMB_RS00860 0.63 +1.4
193,149 - AMB_RS00860 0.63 -2.0
193,149 - AMB_RS00860 0.63 +0.5
193,149 - AMB_RS00860 0.63 -1.4
193,245 + AMB_RS00860 0.69 -0.2
193,246 - AMB_RS00860 0.69 +1.8
193,246 - AMB_RS00860 0.69 -0.8
193,246 - AMB_RS00860 0.69 +0.8
193,246 - AMB_RS00860 0.69 -0.8
194,414 + AMB_RS00865 0.25 +1.3
194,415 - AMB_RS00865 0.25 -1.4
194,415 - AMB_RS00865 0.25 +0.1
194,415 - AMB_RS00865 0.25 +0.4
194,717 + AMB_RS00865 0.37 -1.2
194,717 + AMB_RS00865 0.37 -0.1
194,718 - AMB_RS00865 0.37 -0.1
194,718 - AMB_RS00865 0.37 -0.5
194,718 - AMB_RS00865 0.37 +0.2
194,718 - AMB_RS00865 0.37 -2.5
194,749 + AMB_RS00865 0.38 +1.8
194,750 - AMB_RS00865 0.38 -0.3
195,084 - AMB_RS00865 0.50 -0.6
195,218 + AMB_RS00865 0.55 -1.2
195,506 - AMB_RS00865 0.66 -1.0
195,733 + AMB_RS00865 0.75 +0.6
195,845 + AMB_RS00865 0.79 -0.6
195,845 + AMB_RS00865 0.79 +0.7
195,845 + AMB_RS00865 0.79 +0.2
195,845 + AMB_RS00865 0.79 +1.8
195,845 + AMB_RS00865 0.79 +0.8
195,845 + AMB_RS00865 0.79 +0.2
195,846 - AMB_RS00865 0.79 -0.9
195,846 - AMB_RS00865 0.79 -0.2
195,846 - AMB_RS00865 0.79 +0.3
195,846 - AMB_RS00865 0.79 -1.0
196,099 + AMB_RS00865 0.88 -2.3
196,406 + -0.9
196,593 - +0.1
196,593 - +0.2
196,646 + -0.2
196,647 - -0.6
196,979 - AMB_RS00870 0.79 -0.4
196,979 - AMB_RS00870 0.79 -0.2
197,035 + -1.8
197,035 + -1.7
197,035 + +0.2
197,035 + -0.6
197,036 - +0.2
197,036 - +0.2
197,036 - -0.3
197,036 - -2.4
197,036 - +0.5
197,144 + +0.4
197,144 + +0.2
197,145 - -0.7
197,276 + AMB_RS00875 0.24 +0.1
197,276 + AMB_RS00875 0.24 -0.1
197,276 + AMB_RS00875 0.24 -0.6
197,291 + AMB_RS00875 0.25 +0.2
197,333 + AMB_RS00875 0.31 +0.1
197,333 + AMB_RS00875 0.31 +0.3
197,333 + AMB_RS00875 0.31 -0.2
197,333 + AMB_RS00875 0.31 -0.1
197,334 - AMB_RS00875 0.31 -0.4
197,334 - AMB_RS00875 0.31 -0.2
197,334 - AMB_RS00875 0.31 -0.1
197,334 - AMB_RS00875 0.31 +0.4
197,334 - AMB_RS00875 0.31 -0.2
197,334 - AMB_RS00875 0.31 +0.3
197,334 - AMB_RS00875 0.31 -0.2
197,334 - AMB_RS00875 0.31 -0.6

Or see this region's nucleotide sequence