Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00600

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00595 and AMB_RS00600 are separated by 35 nucleotidesAMB_RS00600 and AMB_RS00605 overlap by 4 nucleotides AMB_RS00595: AMB_RS00595 - B12-binding domain-containing radical SAM protein, at 135,697 to 137,157 _RS00595 AMB_RS00600: AMB_RS00600 - asparagine synthase (glutamine-hydrolyzing), at 137,193 to 139,112 _RS00600 AMB_RS00605: AMB_RS00605 - hypothetical protein, at 139,109 to 140,809 _RS00605 Position (kb) 137 138 139 140Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 136.291 kb on + strand, within AMB_RS00595at 136.292 kb on - strand, within AMB_RS00595at 136.366 kb on + strand, within AMB_RS00595at 136.366 kb on + strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.367 kb on - strand, within AMB_RS00595at 136.388 kb on - strand, within AMB_RS00595at 136.498 kb on + strand, within AMB_RS00595at 136.522 kb on + strand, within AMB_RS00595at 136.674 kb on + strand, within AMB_RS00595at 136.674 kb on + strand, within AMB_RS00595at 136.678 kb on + strand, within AMB_RS00595at 136.679 kb on - strand, within AMB_RS00595at 136.679 kb on - strand, within AMB_RS00595at 136.679 kb on - strand, within AMB_RS00595at 136.868 kb on - strand, within AMB_RS00595at 136.966 kb on + strand, within AMB_RS00595at 136.966 kb on + strand, within AMB_RS00595at 136.966 kb on + strand, within AMB_RS00595at 136.967 kb on - strand, within AMB_RS00595at 136.967 kb on - strand, within AMB_RS00595at 137.007 kb on + strand, within AMB_RS00595at 137.008 kb on - strand, within AMB_RS00595at 137.039 kb on - strandat 137.053 kb on + strandat 137.155 kb on + strandat 137.156 kb on - strandat 137.156 kb on - strandat 137.175 kb on + strandat 137.175 kb on + strandat 137.175 kb on + strandat 137.176 kb on - strandat 137.176 kb on - strandat 137.176 kb on - strandat 137.192 kb on + strandat 137.192 kb on + strandat 137.192 kb on + strandat 137.192 kb on + strandat 137.192 kb on + strandat 137.193 kb on - strandat 137.193 kb on - strandat 137.193 kb on - strandat 137.193 kb on - strandat 137.193 kb on - strandat 137.409 kb on + strand, within AMB_RS00600at 137.409 kb on + strand, within AMB_RS00600at 137.409 kb on + strand, within AMB_RS00600at 137.409 kb on + strand, within AMB_RS00600at 137.409 kb on + strand, within AMB_RS00600at 137.410 kb on - strand, within AMB_RS00600at 137.410 kb on - strand, within AMB_RS00600at 137.556 kb on + strand, within AMB_RS00600at 137.556 kb on + strand, within AMB_RS00600at 137.557 kb on - strand, within AMB_RS00600at 137.593 kb on + strand, within AMB_RS00600at 137.631 kb on + strand, within AMB_RS00600at 137.739 kb on + strand, within AMB_RS00600at 137.739 kb on + strand, within AMB_RS00600at 137.740 kb on - strand, within AMB_RS00600at 137.740 kb on - strand, within AMB_RS00600at 137.740 kb on - strand, within AMB_RS00600at 137.740 kb on - strand, within AMB_RS00600at 137.740 kb on - strand, within AMB_RS00600at 137.745 kb on + strand, within AMB_RS00600at 137.745 kb on + strand, within AMB_RS00600at 137.745 kb on + strand, within AMB_RS00600at 137.746 kb on - strand, within AMB_RS00600at 137.746 kb on - strand, within AMB_RS00600at 137.746 kb on - strand, within AMB_RS00600at 137.746 kb on - strand, within AMB_RS00600at 137.746 kb on - strand, within AMB_RS00600at 137.747 kb on + strand, within AMB_RS00600at 137.853 kb on + strand, within AMB_RS00600at 138.012 kb on + strand, within AMB_RS00600at 138.012 kb on + strand, within AMB_RS00600at 138.012 kb on + strand, within AMB_RS00600at 138.013 kb on - strand, within AMB_RS00600at 138.015 kb on + strand, within AMB_RS00600at 138.131 kb on + strand, within AMB_RS00600at 138.132 kb on - strand, within AMB_RS00600at 138.132 kb on - strand, within AMB_RS00600at 138.132 kb on - strand, within AMB_RS00600at 138.345 kb on + strand, within AMB_RS00600at 138.345 kb on + strand, within AMB_RS00600at 138.420 kb on + strand, within AMB_RS00600at 138.421 kb on - strand, within AMB_RS00600at 138.421 kb on - strand, within AMB_RS00600at 138.421 kb on - strand, within AMB_RS00600at 138.654 kb on + strand, within AMB_RS00600at 138.654 kb on + strand, within AMB_RS00600at 138.654 kb on + strand, within AMB_RS00600at 139.052 kb on - strandat 139.052 kb on - strandat 139.063 kb on - strandat 139.162 kb on - strandat 139.170 kb on - strandat 139.241 kb on + strandat 139.242 kb on - strandat 139.307 kb on + strand, within AMB_RS00605at 139.411 kb on - strand, within AMB_RS00605at 139.433 kb on + strand, within AMB_RS00605at 139.433 kb on + strand, within AMB_RS00605at 139.433 kb on + strand, within AMB_RS00605at 139.707 kb on - strand, within AMB_RS00605at 139.743 kb on - strand, within AMB_RS00605at 139.743 kb on - strand, within AMB_RS00605at 139.777 kb on + strand, within AMB_RS00605at 139.778 kb on - strand, within AMB_RS00605at 139.778 kb on - strand, within AMB_RS00605at 139.784 kb on + strand, within AMB_RS00605at 139.898 kb on + strand, within AMB_RS00605at 139.898 kb on + strand, within AMB_RS00605at 139.899 kb on - strand, within AMB_RS00605at 139.899 kb on - strand, within AMB_RS00605at 140.069 kb on + strand, within AMB_RS00605at 140.069 kb on + strand, within AMB_RS00605at 140.069 kb on + strand, within AMB_RS00605at 140.070 kb on - strand, within AMB_RS00605at 140.070 kb on - strand, within AMB_RS00605at 140.070 kb on - strand, within AMB_RS00605at 140.070 kb on - strand, within AMB_RS00605at 140.070 kb on - strand, within AMB_RS00605

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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136,291 + AMB_RS00595 0.41 -1.6
136,292 - AMB_RS00595 0.41 -0.3
136,366 + AMB_RS00595 0.46 -2.1
136,366 + AMB_RS00595 0.46 -0.1
136,367 - AMB_RS00595 0.46 +0.3
136,367 - AMB_RS00595 0.46 +0.1
136,367 - AMB_RS00595 0.46 +0.2
136,367 - AMB_RS00595 0.46 -1.2
136,388 - AMB_RS00595 0.47 +0.0
136,498 + AMB_RS00595 0.55 +0.6
136,522 + AMB_RS00595 0.56 -0.2
136,674 + AMB_RS00595 0.67 -0.6
136,674 + AMB_RS00595 0.67 +0.2
136,678 + AMB_RS00595 0.67 -1.4
136,679 - AMB_RS00595 0.67 +0.0
136,679 - AMB_RS00595 0.67 -0.8
136,679 - AMB_RS00595 0.67 -0.8
136,868 - AMB_RS00595 0.80 +0.8
136,966 + AMB_RS00595 0.87 -1.2
136,966 + AMB_RS00595 0.87 -0.1
136,966 + AMB_RS00595 0.87 -0.8
136,967 - AMB_RS00595 0.87 -2.2
136,967 - AMB_RS00595 0.87 -0.2
137,007 + AMB_RS00595 0.90 -1.1
137,008 - AMB_RS00595 0.90 -0.0
137,039 - -0.2
137,053 + +0.6
137,155 + -1.6
137,156 - +0.0
137,156 - -0.1
137,175 + +0.1
137,175 + -1.4
137,175 + -0.8
137,176 - +0.1
137,176 - -0.6
137,176 - -0.7
137,192 + +0.8
137,192 + -0.1
137,192 + +0.2
137,192 + -0.2
137,192 + -0.6
137,193 - +0.2
137,193 - -2.3
137,193 - -0.2
137,193 - -0.8
137,193 - -0.7
137,409 + AMB_RS00600 0.11 -0.1
137,409 + AMB_RS00600 0.11 -0.2
137,409 + AMB_RS00600 0.11 -1.6
137,409 + AMB_RS00600 0.11 -0.3
137,409 + AMB_RS00600 0.11 +0.1
137,410 - AMB_RS00600 0.11 -2.8
137,410 - AMB_RS00600 0.11 -0.3
137,556 + AMB_RS00600 0.19 +0.5
137,556 + AMB_RS00600 0.19 -0.1
137,557 - AMB_RS00600 0.19 +0.8
137,593 + AMB_RS00600 0.21 +1.0
137,631 + AMB_RS00600 0.23 -1.8
137,739 + AMB_RS00600 0.28 +1.6
137,739 + AMB_RS00600 0.28 -0.6
137,740 - AMB_RS00600 0.28 -0.2
137,740 - AMB_RS00600 0.28 +0.0
137,740 - AMB_RS00600 0.28 +0.4
137,740 - AMB_RS00600 0.28 -0.0
137,740 - AMB_RS00600 0.28 +2.0
137,745 + AMB_RS00600 0.29 -0.2
137,745 + AMB_RS00600 0.29 -3.4
137,745 + AMB_RS00600 0.29 -0.2
137,746 - AMB_RS00600 0.29 -0.0
137,746 - AMB_RS00600 0.29 +0.0
137,746 - AMB_RS00600 0.29 -1.4
137,746 - AMB_RS00600 0.29 -0.0
137,746 - AMB_RS00600 0.29 +0.6
137,747 + AMB_RS00600 0.29 -1.0
137,853 + AMB_RS00600 0.34 -0.7
138,012 + AMB_RS00600 0.43 +0.1
138,012 + AMB_RS00600 0.43 -0.2
138,012 + AMB_RS00600 0.43 +0.3
138,013 - AMB_RS00600 0.43 +0.8
138,015 + AMB_RS00600 0.43 +0.5
138,131 + AMB_RS00600 0.49 -0.2
138,132 - AMB_RS00600 0.49 -0.2
138,132 - AMB_RS00600 0.49 +0.3
138,132 - AMB_RS00600 0.49 -0.0
138,345 + AMB_RS00600 0.60 -0.3
138,345 + AMB_RS00600 0.60 +0.9
138,420 + AMB_RS00600 0.64 +0.2
138,421 - AMB_RS00600 0.64 -0.2
138,421 - AMB_RS00600 0.64 -2.0
138,421 - AMB_RS00600 0.64 +0.7
138,654 + AMB_RS00600 0.76 -0.6
138,654 + AMB_RS00600 0.76 -2.0
138,654 + AMB_RS00600 0.76 +0.3
139,052 - -0.0
139,052 - -0.6
139,063 - +0.2
139,162 - -0.2
139,170 - -2.2
139,241 + -2.1
139,242 - -0.2
139,307 + AMB_RS00605 0.12 -3.3
139,411 - AMB_RS00605 0.18 -0.2
139,433 + AMB_RS00605 0.19 -0.1
139,433 + AMB_RS00605 0.19 -1.4
139,433 + AMB_RS00605 0.19 +0.2
139,707 - AMB_RS00605 0.35 -1.0
139,743 - AMB_RS00605 0.37 -0.2
139,743 - AMB_RS00605 0.37 -3.3
139,777 + AMB_RS00605 0.39 -0.1
139,778 - AMB_RS00605 0.39 -2.5
139,778 - AMB_RS00605 0.39 -1.0
139,784 + AMB_RS00605 0.40 -1.4
139,898 + AMB_RS00605 0.46 -1.4
139,898 + AMB_RS00605 0.46 +0.4
139,899 - AMB_RS00605 0.46 -2.2
139,899 - AMB_RS00605 0.46 +0.8
140,069 + AMB_RS00605 0.56 -0.5
140,069 + AMB_RS00605 0.56 -1.4
140,069 + AMB_RS00605 0.56 -0.2
140,070 - AMB_RS00605 0.56 -1.2
140,070 - AMB_RS00605 0.56 +0.2
140,070 - AMB_RS00605 0.56 -0.2
140,070 - AMB_RS00605 0.56 +0.2
140,070 - AMB_RS00605 0.56 +0.2

Or see this region's nucleotide sequence