Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00505

Experiment: 30_an_initial_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS00500 and AMB_RS00505 are separated by 25 nucleotidesAMB_RS00505 and AMB_RS00510 are separated by 66 nucleotides AMB_RS00500: AMB_RS00500 - polysaccharide biosynthesis protein, at 112,647 to 114,548 _RS00500 AMB_RS00505: AMB_RS00505 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH, at 114,574 to 116,154 _RS00505 AMB_RS00510: AMB_RS00510 - glycosyltransferase family 1 protein, at 116,221 to 117,342 _RS00510 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -1 0 1at 114.519 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
remove
114,519 + -0.8

Or see this region's nucleotide sequence