Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29215

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS29205 and ABID97_RS29210 are separated by 29 nucleotidesABID97_RS29210 and ABID97_RS29215 are separated by 38 nucleotidesABID97_RS29215 and ABID97_RS29220 are separated by 108 nucleotides ABID97_RS29205: ABID97_RS29205 - alkaline phosphatase D family protein, at 760,859 to 766,438 _RS29205 ABID97_RS29210: ABID97_RS29210 - TerC family protein, at 766,468 to 767,217 _RS29210 ABID97_RS29215: ABID97_RS29215 - LysR family transcriptional regulator, at 767,256 to 768,191 _RS29215 ABID97_RS29220: ABID97_RS29220 - tartrate dehydrogenase, at 768,300 to 769,364 _RS29220 Position (kb) 767 768 769Strain fitness (log2 ratio) -1 0 1at 766.574 kb on + strand, within ABID97_RS29210at 766.580 kb on + strand, within ABID97_RS29210at 766.580 kb on + strand, within ABID97_RS29210at 766.581 kb on - strand, within ABID97_RS29210at 767.257 kb on + strandat 767.257 kb on + strandat 767.357 kb on - strand, within ABID97_RS29215at 768.309 kb on + strandat 768.310 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
766,574 + ABID97_RS29210 0.14 -0.0
766,580 + ABID97_RS29210 0.15 -0.2
766,580 + ABID97_RS29210 0.15 -0.7
766,581 - ABID97_RS29210 0.15 -0.4
767,257 + -0.1
767,257 + -0.9
767,357 - ABID97_RS29215 0.11 -1.0
768,309 + +1.4
768,310 - -0.0

Or see this region's nucleotide sequence