Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29020 and ABID97_RS29025 are separated by 34 nucleotides ABID97_RS29025 and ABID97_RS29030 are separated by 21 nucleotides ABID97_RS29030 and ABID97_RS29035 are separated by 26 nucleotides
ABID97_RS29020: ABID97_RS29020 - tripartite tricarboxylate transporter substrate binding protein, at 721,870 to 722,856
_RS29020
ABID97_RS29025: ABID97_RS29025 - 3-isopropylmalate dehydratase large subunit, at 722,891 to 724,312
_RS29025
ABID97_RS29030: ABID97_RS29030 - 3-isopropylmalate dehydratase small subunit, at 724,334 to 724,936
_RS29030
ABID97_RS29035: ABID97_RS29035 - 3-isopropylmalate dehydrogenase, at 724,963 to 726,042
_RS29035
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -1
0
1
2 at 721.963 kb on + strand at 722.146 kb on + strand, within ABID97_RS29020 at 722.147 kb on - strand, within ABID97_RS29020 at 722.197 kb on + strand, within ABID97_RS29020 at 722.198 kb on - strand, within ABID97_RS29020 at 722.245 kb on + strand, within ABID97_RS29020 at 722.245 kb on + strand, within ABID97_RS29020 at 722.245 kb on + strand, within ABID97_RS29020 at 722.246 kb on - strand, within ABID97_RS29020 at 722.246 kb on - strand, within ABID97_RS29020 at 722.246 kb on - strand, within ABID97_RS29020 at 722.351 kb on - strand, within ABID97_RS29020 at 722.437 kb on + strand, within ABID97_RS29020 at 722.623 kb on + strand, within ABID97_RS29020 at 722.624 kb on - strand, within ABID97_RS29020 at 722.624 kb on - strand, within ABID97_RS29020 at 722.975 kb on + strand at 722.975 kb on + strand at 722.976 kb on - strand at 723.086 kb on + strand, within ABID97_RS29025 at 723.086 kb on + strand, within ABID97_RS29025 at 723.086 kb on + strand, within ABID97_RS29025 at 723.087 kb on - strand, within ABID97_RS29025 at 723.087 kb on - strand, within ABID97_RS29025 at 723.872 kb on + strand, within ABID97_RS29025 at 724.454 kb on + strand, within ABID97_RS29030 at 724.970 kb on + strand at 724.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 721,963 + -0.4 722,146 + ABID97_RS29020 0.28 -0.2 722,147 - ABID97_RS29020 0.28 -0.4 722,197 + ABID97_RS29020 0.33 -0.6 722,198 - ABID97_RS29020 0.33 +0.0 722,245 + ABID97_RS29020 0.38 +0.0 722,245 + ABID97_RS29020 0.38 -0.1 722,245 + ABID97_RS29020 0.38 -0.9 722,246 - ABID97_RS29020 0.38 -0.1 722,246 - ABID97_RS29020 0.38 -1.5 722,246 - ABID97_RS29020 0.38 -1.7 722,351 - ABID97_RS29020 0.49 -1.3 722,437 + ABID97_RS29020 0.57 -0.2 722,623 + ABID97_RS29020 0.76 +0.0 722,624 - ABID97_RS29020 0.76 +2.5 722,624 - ABID97_RS29020 0.76 -0.4 722,975 + -0.0 722,975 + -0.5 722,976 - -0.5 723,086 + ABID97_RS29025 0.14 -1.5 723,086 + ABID97_RS29025 0.14 -0.5 723,086 + ABID97_RS29025 0.14 -0.8 723,087 - ABID97_RS29025 0.14 -0.3 723,087 - ABID97_RS29025 0.14 -0.3 723,872 + ABID97_RS29025 0.69 -0.2 724,454 + ABID97_RS29030 0.20 -0.4 724,970 + -0.4 724,971 - +0.3
Or see this region's nucleotide sequence