Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24975 and ABID97_RS24980 are separated by 109 nucleotides ABID97_RS24980 and ABID97_RS24985 are separated by 178 nucleotides ABID97_RS24985 and ABID97_RS24990 are separated by 12 nucleotides
ABID97_RS24975: ABID97_RS24975 - multidrug transporter subunit MdtD, at 5,171,118 to 5,172,548
_RS24975
ABID97_RS24980: ABID97_RS24980 - iron-sulfur cluster insertion protein ErpA, at 5,172,658 to 5,173,023
_RS24980
ABID97_RS24985: ABID97_RS24985 - 30S ribosomal protein S9, at 5,173,202 to 5,173,594
_RS24985
ABID97_RS24990: ABID97_RS24990 - 50S ribosomal protein L13, at 5,173,607 to 5,174,038
_RS24990
Position (kb) 5172
5173
5174 Strain fitness (log2 ratio) -1
0
1
2 at 5171.935 kb on + strand, within ABID97_RS24975 at 5171.936 kb on - strand, within ABID97_RS24975 at 5172.058 kb on + strand, within ABID97_RS24975 at 5172.059 kb on - strand, within ABID97_RS24975 at 5172.059 kb on - strand, within ABID97_RS24975 at 5172.059 kb on - strand, within ABID97_RS24975 at 5172.059 kb on - strand, within ABID97_RS24975 at 5172.157 kb on - strand, within ABID97_RS24975 at 5172.264 kb on + strand, within ABID97_RS24975 at 5172.265 kb on - strand, within ABID97_RS24975 at 5172.376 kb on + strand, within ABID97_RS24975 at 5172.376 kb on + strand, within ABID97_RS24975 at 5172.377 kb on - strand, within ABID97_RS24975 at 5172.652 kb on - strand at 5173.031 kb on - strand at 5173.061 kb on - strand at 5173.061 kb on - strand at 5173.061 kb on - strand at 5173.071 kb on + strand at 5173.071 kb on + strand at 5173.072 kb on - strand at 5173.256 kb on - strand, within ABID97_RS24985 at 5173.256 kb on - strand, within ABID97_RS24985
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 5,171,935 + ABID97_RS24975 0.57 +0.1 5,171,936 - ABID97_RS24975 0.57 +0.7 5,172,058 + ABID97_RS24975 0.66 -0.2 5,172,059 - ABID97_RS24975 0.66 +0.1 5,172,059 - ABID97_RS24975 0.66 +0.1 5,172,059 - ABID97_RS24975 0.66 +0.1 5,172,059 - ABID97_RS24975 0.66 -0.7 5,172,157 - ABID97_RS24975 0.73 -0.3 5,172,264 + ABID97_RS24975 0.80 +0.3 5,172,265 - ABID97_RS24975 0.80 +0.4 5,172,376 + ABID97_RS24975 0.88 -0.1 5,172,376 + ABID97_RS24975 0.88 +0.2 5,172,377 - ABID97_RS24975 0.88 -0.3 5,172,652 - +0.2 5,173,031 - +1.7 5,173,061 - -0.5 5,173,061 - -0.5 5,173,061 - +0.3 5,173,071 + -0.2 5,173,071 + -0.0 5,173,072 - -0.2 5,173,256 - ABID97_RS24985 0.14 +2.2 5,173,256 - ABID97_RS24985 0.14 +1.5
Or see this region's nucleotide sequence