Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19715

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19710 and ABID97_RS19715 are separated by 10 nucleotidesABID97_RS19715 and ABID97_RS19720 are separated by 150 nucleotides ABID97_RS19710: ABID97_RS19710 - 3-carboxy-cis,cis-muconate cycloisomerase, at 4,071,831 to 4,073,042 _RS19710 ABID97_RS19715: ABID97_RS19715 - shikimate dehydrogenase, at 4,073,053 to 4,073,886 _RS19715 ABID97_RS19720: ABID97_RS19720 - shikimate dehydrogenase, at 4,074,037 to 4,074,960 _RS19720 Position (kb) 4073 4074Strain fitness (log2 ratio) -1 0 1at 4073.057 kb on + strandat 4073.207 kb on + strand, within ABID97_RS19715at 4073.208 kb on - strand, within ABID97_RS19715at 4073.962 kb on + strandat 4073.991 kb on + strandat 4073.991 kb on + strandat 4073.991 kb on + strandat 4074.476 kb on + strand, within ABID97_RS19720at 4074.476 kb on + strand, within ABID97_RS19720

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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4,073,057 + +0.1
4,073,207 + ABID97_RS19715 0.18 -0.4
4,073,208 - ABID97_RS19715 0.19 -0.9
4,073,962 + -0.1
4,073,991 + +1.0
4,073,991 + -0.2
4,073,991 + -0.7
4,074,476 + ABID97_RS19720 0.48 -0.8
4,074,476 + ABID97_RS19720 0.48 -0.9

Or see this region's nucleotide sequence