Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17845 and ABID97_RS17850 are separated by 192 nucleotides ABID97_RS17850 and ABID97_RS17855 are separated by 136 nucleotides ABID97_RS17855 and ABID97_RS17860 are separated by 30 nucleotides
ABID97_RS17845: ABID97_RS17845 - cysteine--tRNA ligase, at 3,684,345 to 3,685,721
_RS17845
ABID97_RS17850: ABID97_RS17850 - tetratricopeptide repeat protein, at 3,685,914 to 3,686,504
_RS17850
ABID97_RS17855: ABID97_RS17855 - peptidylprolyl isomerase, at 3,686,641 to 3,687,186
_RS17855
ABID97_RS17860: ABID97_RS17860 - peptidylprolyl isomerase, at 3,687,217 to 3,687,729
_RS17860
Position (kb) 3685
3686
3687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3685.775 kb on - strand at 3685.775 kb on - strand at 3685.845 kb on + strand at 3685.846 kb on - strand at 3685.846 kb on - strand at 3686.346 kb on + strand, within ABID97_RS17850 at 3686.346 kb on + strand, within ABID97_RS17850 at 3686.502 kb on + strand at 3686.503 kb on - strand at 3686.785 kb on + strand, within ABID97_RS17855 at 3686.804 kb on - strand, within ABID97_RS17855 at 3686.939 kb on - strand, within ABID97_RS17855 at 3687.044 kb on - strand, within ABID97_RS17855 at 3687.050 kb on - strand, within ABID97_RS17855 at 3687.184 kb on + strand at 3687.253 kb on + strand at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.319 kb on + strand, within ABID97_RS17860 at 3687.472 kb on + strand, within ABID97_RS17860
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 3,685,775 - -0.4 3,685,775 - -2.2 3,685,845 + -0.2 3,685,846 - +0.8 3,685,846 - +1.2 3,686,346 + ABID97_RS17850 0.73 -1.5 3,686,346 + ABID97_RS17850 0.73 +1.1 3,686,502 + +1.9 3,686,503 - -0.8 3,686,785 + ABID97_RS17855 0.26 -0.2 3,686,804 - ABID97_RS17855 0.30 -0.1 3,686,939 - ABID97_RS17855 0.55 +1.6 3,687,044 - ABID97_RS17855 0.74 -0.9 3,687,050 - ABID97_RS17855 0.75 -0.2 3,687,184 + -0.0 3,687,253 + +0.9 3,687,319 + ABID97_RS17860 0.20 -0.0 3,687,319 + ABID97_RS17860 0.20 +0.6 3,687,319 + ABID97_RS17860 0.20 +0.4 3,687,319 + ABID97_RS17860 0.20 +1.1 3,687,319 + ABID97_RS17860 0.20 +0.6 3,687,472 + ABID97_RS17860 0.50 +0.1
Or see this region's nucleotide sequence