Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16480

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16470 and ABID97_RS16475 overlap by 4 nucleotidesABID97_RS16475 and ABID97_RS16480 are separated by 2 nucleotidesABID97_RS16480 and ABID97_RS16485 are separated by 21 nucleotides ABID97_RS16470: ABID97_RS16470 - translational GTPase TypA, at 3,404,378 to 3,406,213 _RS16470 ABID97_RS16475: ABID97_RS16475 - tRNA pseudouridine(55) synthase TruB, at 3,406,210 to 3,407,166 _RS16475 ABID97_RS16480: ABID97_RS16480 - 30S ribosome-binding factor RbfA, at 3,407,169 to 3,407,540 _RS16480 ABID97_RS16485: ABID97_RS16485 - translation initiation factor IF-2, at 3,407,562 to 3,410,525 _RS16485 Position (kb) 3407 3408Strain fitness (log2 ratio) -2 -1 0 1at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.625 kb on + strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.626 kb on - strand, within ABID97_RS16475at 3406.751 kb on + strand, within ABID97_RS16475at 3406.752 kb on - strand, within ABID97_RS16475at 3406.752 kb on - strand, within ABID97_RS16475at 3406.935 kb on - strand, within ABID97_RS16475at 3407.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,406,625 + ABID97_RS16475 0.43 -0.0
3,406,625 + ABID97_RS16475 0.43 +0.6
3,406,625 + ABID97_RS16475 0.43 -0.7
3,406,625 + ABID97_RS16475 0.43 -0.6
3,406,625 + ABID97_RS16475 0.43 +1.2
3,406,626 - ABID97_RS16475 0.43 +0.5
3,406,626 - ABID97_RS16475 0.43 +0.3
3,406,626 - ABID97_RS16475 0.43 +1.3
3,406,626 - ABID97_RS16475 0.43 +0.4
3,406,626 - ABID97_RS16475 0.43 +0.6
3,406,626 - ABID97_RS16475 0.43 +0.3
3,406,751 + ABID97_RS16475 0.57 +0.2
3,406,752 - ABID97_RS16475 0.57 -2.1
3,406,752 - ABID97_RS16475 0.57 -0.1
3,406,935 - ABID97_RS16475 0.76 -0.3
3,407,564 - -0.5

Or see this region's nucleotide sequence