Strain Fitness in Variovorax sp. OAS795 around ABID97_RS07055

Experiment: casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS07050 and ABID97_RS07055 overlap by 4 nucleotidesABID97_RS07055 and ABID97_RS07060 are separated by 56 nucleotidesABID97_RS07060 and ABID97_RS07065 are separated by 4 nucleotides ABID97_RS07050: ABID97_RS07050 - ABC transporter ATP-binding protein, at 1,492,583 to 1,493,653 _RS07050 ABID97_RS07055: ABID97_RS07055 - dipeptide ABC transporter ATP-binding protein, at 1,493,650 to 1,494,678 _RS07055 ABID97_RS07060: ABID97_RS07060 - 4,5-DOPA dioxygenase extradiol, at 1,494,735 to 1,495,667 _RS07060 ABID97_RS07065: ABID97_RS07065 - glucose-6-phosphate dehydrogenase, at 1,495,672 to 1,497,135 _RS07065 Position (kb) 1493 1494 1495Strain fitness (log2 ratio) -1 0 1 2at 1492.898 kb on + strand, within ABID97_RS07050at 1492.898 kb on + strand, within ABID97_RS07050at 1492.898 kb on + strand, within ABID97_RS07050at 1492.898 kb on + strand, within ABID97_RS07050at 1492.899 kb on - strand, within ABID97_RS07050at 1493.264 kb on + strand, within ABID97_RS07050at 1493.264 kb on + strand, within ABID97_RS07050at 1493.264 kb on + strand, within ABID97_RS07050at 1493.265 kb on - strand, within ABID97_RS07050at 1493.265 kb on - strand, within ABID97_RS07050at 1493.265 kb on - strand, within ABID97_RS07050at 1493.327 kb on + strand, within ABID97_RS07050at 1493.327 kb on + strand, within ABID97_RS07050at 1493.328 kb on - strand, within ABID97_RS07050at 1493.328 kb on - strand, within ABID97_RS07050at 1493.329 kb on + strand, within ABID97_RS07050at 1493.330 kb on - strand, within ABID97_RS07050at 1493.438 kb on + strand, within ABID97_RS07050at 1493.439 kb on - strand, within ABID97_RS07050at 1493.439 kb on - strand, within ABID97_RS07050at 1493.893 kb on + strand, within ABID97_RS07055at 1493.893 kb on + strand, within ABID97_RS07055at 1494.008 kb on - strand, within ABID97_RS07055at 1494.329 kb on - strand, within ABID97_RS07055at 1494.329 kb on - strand, within ABID97_RS07055at 1494.391 kb on + strand, within ABID97_RS07055at 1494.391 kb on + strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.392 kb on - strand, within ABID97_RS07055at 1494.454 kb on + strand, within ABID97_RS07055at 1494.457 kb on - strand, within ABID97_RS07055at 1494.676 kb on + strandat 1494.677 kb on - strandat 1495.284 kb on + strand, within ABID97_RS07060at 1495.285 kb on - strand, within ABID97_RS07060at 1495.507 kb on - strand, within ABID97_RS07060at 1495.507 kb on - strand, within ABID97_RS07060at 1495.554 kb on + strand, within ABID97_RS07060at 1495.554 kb on + strand, within ABID97_RS07060at 1495.558 kb on - strand, within ABID97_RS07060at 1495.614 kb on + strandat 1495.615 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
remove
1,492,898 + ABID97_RS07050 0.29 -0.7
1,492,898 + ABID97_RS07050 0.29 -0.8
1,492,898 + ABID97_RS07050 0.29 -1.1
1,492,898 + ABID97_RS07050 0.29 -0.3
1,492,899 - ABID97_RS07050 0.30 -0.5
1,493,264 + ABID97_RS07050 0.64 -0.2
1,493,264 + ABID97_RS07050 0.64 -0.5
1,493,264 + ABID97_RS07050 0.64 +0.4
1,493,265 - ABID97_RS07050 0.64 -0.3
1,493,265 - ABID97_RS07050 0.64 -0.8
1,493,265 - ABID97_RS07050 0.64 -0.2
1,493,327 + ABID97_RS07050 0.69 +0.6
1,493,327 + ABID97_RS07050 0.69 -0.4
1,493,328 - ABID97_RS07050 0.70 +2.1
1,493,328 - ABID97_RS07050 0.70 -0.1
1,493,329 + ABID97_RS07050 0.70 -0.5
1,493,330 - ABID97_RS07050 0.70 -1.4
1,493,438 + ABID97_RS07050 0.80 +0.9
1,493,439 - ABID97_RS07050 0.80 +0.7
1,493,439 - ABID97_RS07050 0.80 -0.8
1,493,893 + ABID97_RS07055 0.24 +0.2
1,493,893 + ABID97_RS07055 0.24 -0.4
1,494,008 - ABID97_RS07055 0.35 -0.9
1,494,329 - ABID97_RS07055 0.66 -0.6
1,494,329 - ABID97_RS07055 0.66 -0.2
1,494,391 + ABID97_RS07055 0.72 -0.6
1,494,391 + ABID97_RS07055 0.72 +0.1
1,494,392 - ABID97_RS07055 0.72 -0.5
1,494,392 - ABID97_RS07055 0.72 -1.4
1,494,392 - ABID97_RS07055 0.72 -0.1
1,494,454 + ABID97_RS07055 0.78 +0.5
1,494,457 - ABID97_RS07055 0.78 -0.2
1,494,676 + -0.4
1,494,677 - +0.7
1,495,284 + ABID97_RS07060 0.59 -0.1
1,495,285 - ABID97_RS07060 0.59 -0.4
1,495,507 - ABID97_RS07060 0.83 -0.8
1,495,507 - ABID97_RS07060 0.83 -0.7
1,495,554 + ABID97_RS07060 0.88 -0.1
1,495,554 + ABID97_RS07060 0.88 +0.1
1,495,558 - ABID97_RS07060 0.88 +0.1
1,495,614 + -0.1
1,495,615 - +0.4

Or see this region's nucleotide sequence