Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05950

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05940 and ABID97_RS05945 are separated by 1 nucleotidesABID97_RS05945 and ABID97_RS05950 are separated by 33 nucleotidesABID97_RS05950 and ABID97_RS05955 are separated by 75 nucleotides ABID97_RS05940: ABID97_RS05940 - amino acid ABC transporter permease, at 1,255,903 to 1,256,634 _RS05940 ABID97_RS05945: ABID97_RS05945 - amino acid ABC transporter permease, at 1,256,636 to 1,257,325 _RS05945 ABID97_RS05950: ABID97_RS05950 - amino acid ABC transporter ATP-binding protein, at 1,257,359 to 1,258,096 _RS05950 ABID97_RS05955: ABID97_RS05955 - nucleoside hydrolase, at 1,258,172 to 1,259,113 _RS05955 Position (kb) 1257 1258 1259Strain fitness (log2 ratio) -1 0 1at 1256.369 kb on - strand, within ABID97_RS05940at 1256.509 kb on + strand, within ABID97_RS05940at 1256.509 kb on + strand, within ABID97_RS05940at 1256.510 kb on - strand, within ABID97_RS05940at 1256.530 kb on + strand, within ABID97_RS05940at 1256.531 kb on - strand, within ABID97_RS05940at 1256.531 kb on - strand, within ABID97_RS05940at 1256.531 kb on - strand, within ABID97_RS05940at 1256.569 kb on + strandat 1256.569 kb on + strandat 1256.569 kb on + strandat 1256.569 kb on + strandat 1256.702 kb on + strandat 1256.702 kb on + strandat 1256.702 kb on + strandat 1256.702 kb on + strandat 1256.703 kb on - strandat 1256.816 kb on + strand, within ABID97_RS05945at 1256.816 kb on + strand, within ABID97_RS05945at 1256.816 kb on + strand, within ABID97_RS05945at 1256.816 kb on + strand, within ABID97_RS05945at 1256.816 kb on + strand, within ABID97_RS05945at 1256.816 kb on + strand, within ABID97_RS05945at 1256.816 kb on + strand, within ABID97_RS05945at 1256.817 kb on - strand, within ABID97_RS05945at 1256.817 kb on - strand, within ABID97_RS05945at 1256.817 kb on - strand, within ABID97_RS05945at 1256.817 kb on - strand, within ABID97_RS05945at 1256.817 kb on - strand, within ABID97_RS05945at 1257.053 kb on + strand, within ABID97_RS05945at 1257.054 kb on - strand, within ABID97_RS05945at 1257.054 kb on - strand, within ABID97_RS05945at 1257.054 kb on - strand, within ABID97_RS05945at 1257.158 kb on + strand, within ABID97_RS05945at 1257.233 kb on + strand, within ABID97_RS05945at 1257.233 kb on + strand, within ABID97_RS05945at 1257.234 kb on - strand, within ABID97_RS05945at 1257.254 kb on + strand, within ABID97_RS05945at 1257.255 kb on - strand, within ABID97_RS05945at 1257.255 kb on - strand, within ABID97_RS05945at 1257.269 kb on + strandat 1257.269 kb on + strandat 1257.270 kb on - strandat 1257.270 kb on - strandat 1257.270 kb on - strandat 1258.154 kb on - strandat 1258.154 kb on - strandat 1258.413 kb on + strand, within ABID97_RS05955at 1258.437 kb on + strand, within ABID97_RS05955at 1258.438 kb on - strand, within ABID97_RS05955at 1258.791 kb on + strand, within ABID97_RS05955at 1258.792 kb on - strand, within ABID97_RS05955at 1258.792 kb on - strand, within ABID97_RS05955at 1258.792 kb on - strand, within ABID97_RS05955at 1258.921 kb on - strand, within ABID97_RS05955at 1258.921 kb on - strand, within ABID97_RS05955

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,256,369 - ABID97_RS05940 0.64 +0.3
1,256,509 + ABID97_RS05940 0.83 -0.0
1,256,509 + ABID97_RS05940 0.83 +0.6
1,256,510 - ABID97_RS05940 0.83 +0.1
1,256,530 + ABID97_RS05940 0.86 +1.0
1,256,531 - ABID97_RS05940 0.86 +0.1
1,256,531 - ABID97_RS05940 0.86 +0.3
1,256,531 - ABID97_RS05940 0.86 +0.1
1,256,569 + +0.7
1,256,569 + -0.0
1,256,569 + +0.3
1,256,569 + -0.9
1,256,702 + +1.0
1,256,702 + -0.1
1,256,702 + +0.1
1,256,702 + +0.1
1,256,703 - +0.4
1,256,816 + ABID97_RS05945 0.26 -0.1
1,256,816 + ABID97_RS05945 0.26 +1.3
1,256,816 + ABID97_RS05945 0.26 -0.1
1,256,816 + ABID97_RS05945 0.26 +1.5
1,256,816 + ABID97_RS05945 0.26 +1.4
1,256,816 + ABID97_RS05945 0.26 -0.6
1,256,816 + ABID97_RS05945 0.26 +0.9
1,256,817 - ABID97_RS05945 0.26 +0.5
1,256,817 - ABID97_RS05945 0.26 +0.9
1,256,817 - ABID97_RS05945 0.26 -0.3
1,256,817 - ABID97_RS05945 0.26 +0.5
1,256,817 - ABID97_RS05945 0.26 +0.7
1,257,053 + ABID97_RS05945 0.60 +0.3
1,257,054 - ABID97_RS05945 0.61 +0.6
1,257,054 - ABID97_RS05945 0.61 +0.5
1,257,054 - ABID97_RS05945 0.61 +0.8
1,257,158 + ABID97_RS05945 0.76 +0.0
1,257,233 + ABID97_RS05945 0.87 -0.4
1,257,233 + ABID97_RS05945 0.87 +1.0
1,257,234 - ABID97_RS05945 0.87 +0.9
1,257,254 + ABID97_RS05945 0.90 +0.3
1,257,255 - ABID97_RS05945 0.90 +0.5
1,257,255 - ABID97_RS05945 0.90 +0.4
1,257,269 + +0.0
1,257,269 + +0.3
1,257,270 - -0.4
1,257,270 - +1.5
1,257,270 - +1.2
1,258,154 - +0.2
1,258,154 - +0.5
1,258,413 + ABID97_RS05955 0.26 +1.2
1,258,437 + ABID97_RS05955 0.28 -0.1
1,258,438 - ABID97_RS05955 0.28 -0.1
1,258,791 + ABID97_RS05955 0.66 -0.0
1,258,792 - ABID97_RS05955 0.66 +0.1
1,258,792 - ABID97_RS05955 0.66 -0.7
1,258,792 - ABID97_RS05955 0.66 -0.8
1,258,921 - ABID97_RS05955 0.80 -0.2
1,258,921 - ABID97_RS05955 0.80 -0.4

Or see this region's nucleotide sequence