Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04515

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04505 and ABID97_RS04510 are separated by 87 nucleotidesABID97_RS04510 and ABID97_RS04515 are separated by 148 nucleotidesABID97_RS04515 and ABID97_RS04520 are separated by 10 nucleotidesABID97_RS04520 and ABID97_RS04525 are separated by 20 nucleotides ABID97_RS04505: ABID97_RS04505 - ferric iron uptake transcriptional regulator, at 933,843 to 934,262 _RS04505 ABID97_RS04510: ABID97_RS04510 - outer membrane protein assembly factor BamE, at 934,350 to 934,913 _RS04510 ABID97_RS04515: ABID97_RS04515 - 4-hydroxy-tetrahydrodipicolinate reductase, at 935,062 to 935,862 _RS04515 ABID97_RS04520: ABID97_RS04520 - MotA/TolQ/ExbB proton channel family protein, at 935,873 to 936,580 _RS04520 ABID97_RS04525: ABID97_RS04525 - biopolymer transporter ExbD, at 936,601 to 937,071 _RS04525 Position (kb) 935 936Strain fitness (log2 ratio) -2 -1 0 1at 934.099 kb on + strand, within ABID97_RS04505at 934.235 kb on + strandat 934.313 kb on - strandat 936.314 kb on + strand, within ABID97_RS04520at 936.315 kb on - strand, within ABID97_RS04520at 936.444 kb on - strand, within ABID97_RS04520at 936.579 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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934,099 + ABID97_RS04505 0.61 -0.7
934,235 + -2.5
934,313 - -0.6
936,314 + ABID97_RS04520 0.62 -0.1
936,315 - ABID97_RS04520 0.62 +0.0
936,444 - ABID97_RS04520 0.81 +1.5
936,579 - -0.7

Or see this region's nucleotide sequence