Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04465 and ABID97_RS04470 are separated by 31 nucleotides ABID97_RS04470 and ABID97_RS04475 are separated by 3 nucleotides ABID97_RS04475 and ABID97_RS04480 overlap by 8 nucleotides
ABID97_RS04465: ABID97_RS04465 - dipeptide ABC transporter ATP-binding protein, at 924,650 to 925,693
_RS04465
ABID97_RS04470: ABID97_RS04470 - ABC transporter substrate-binding protein, at 925,725 to 927,359
_RS04470
ABID97_RS04475: ABID97_RS04475 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 927,363 to 928,148
_RS04475
ABID97_RS04480: ABID97_RS04480 - magnesium/cobalt transporter CorA, at 928,141 to 929,127
_RS04480
Position (kb) 925
926
927
928 Strain fitness (log2 ratio) -1
0
1 at 925.112 kb on + strand, within ABID97_RS04465 at 925.283 kb on + strand, within ABID97_RS04465 at 925.283 kb on + strand, within ABID97_RS04465 at 925.346 kb on + strand, within ABID97_RS04465 at 925.346 kb on + strand, within ABID97_RS04465 at 925.347 kb on - strand, within ABID97_RS04465 at 925.409 kb on + strand, within ABID97_RS04465 at 925.410 kb on - strand, within ABID97_RS04465 at 925.843 kb on - strand at 925.872 kb on + strand at 925.923 kb on + strand, within ABID97_RS04470 at 926.014 kb on - strand, within ABID97_RS04470 at 926.014 kb on - strand, within ABID97_RS04470 at 926.169 kb on + strand, within ABID97_RS04470 at 926.290 kb on - strand, within ABID97_RS04470 at 926.314 kb on - strand, within ABID97_RS04470 at 926.314 kb on - strand, within ABID97_RS04470 at 926.385 kb on + strand, within ABID97_RS04470 at 926.397 kb on + strand, within ABID97_RS04470 at 926.439 kb on + strand, within ABID97_RS04470 at 926.625 kb on + strand, within ABID97_RS04470 at 926.634 kb on + strand, within ABID97_RS04470 at 926.724 kb on + strand, within ABID97_RS04470 at 926.778 kb on + strand, within ABID97_RS04470 at 926.779 kb on - strand, within ABID97_RS04470 at 926.899 kb on - strand, within ABID97_RS04470 at 927.079 kb on - strand, within ABID97_RS04470 at 927.142 kb on - strand, within ABID97_RS04470 at 927.210 kb on + strand at 927.210 kb on + strand at 927.211 kb on - strand at 927.339 kb on + strand at 927.339 kb on + strand at 927.340 kb on - strand at 927.340 kb on - strand at 928.078 kb on - strand at 928.169 kb on + strand at 928.169 kb on + strand at 928.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 925,112 + ABID97_RS04465 0.44 +1.0 925,283 + ABID97_RS04465 0.61 +1.1 925,283 + ABID97_RS04465 0.61 -0.0 925,346 + ABID97_RS04465 0.67 -0.2 925,346 + ABID97_RS04465 0.67 +0.4 925,347 - ABID97_RS04465 0.67 +1.3 925,409 + ABID97_RS04465 0.73 +0.5 925,410 - ABID97_RS04465 0.73 -0.4 925,843 - -0.3 925,872 + +0.1 925,923 + ABID97_RS04470 0.12 -0.3 926,014 - ABID97_RS04470 0.18 -0.6 926,014 - ABID97_RS04470 0.18 +0.1 926,169 + ABID97_RS04470 0.27 -0.5 926,290 - ABID97_RS04470 0.35 +0.9 926,314 - ABID97_RS04470 0.36 -0.4 926,314 - ABID97_RS04470 0.36 -0.1 926,385 + ABID97_RS04470 0.40 -0.1 926,397 + ABID97_RS04470 0.41 -1.3 926,439 + ABID97_RS04470 0.44 -1.0 926,625 + ABID97_RS04470 0.55 -0.7 926,634 + ABID97_RS04470 0.56 -0.3 926,724 + ABID97_RS04470 0.61 +0.1 926,778 + ABID97_RS04470 0.64 -0.4 926,779 - ABID97_RS04470 0.64 +0.5 926,899 - ABID97_RS04470 0.72 +0.0 927,079 - ABID97_RS04470 0.83 -0.4 927,142 - ABID97_RS04470 0.87 -0.1 927,210 + +0.0 927,210 + -0.1 927,211 - -1.0 927,339 + +0.2 927,339 + -0.6 927,340 - -0.2 927,340 - -0.3 928,078 - -0.0 928,169 + +0.2 928,169 + -1.1 928,214 + -0.2
Or see this region's nucleotide sequence