Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00245 and ABID97_RS00250 overlap by 4 nucleotides ABID97_RS00250 and ABID97_RS00255 are separated by 51 nucleotides ABID97_RS00255 and ABID97_RS00260 are separated by 27 nucleotides
ABID97_RS00245: ABID97_RS00245 - Lrp/AsnC ligand binding domain-containing protein, at 57,087 to 57,560
_RS00245
ABID97_RS00250: ABID97_RS00250 - YggS family pyridoxal phosphate-dependent enzyme, at 57,557 to 58,243
_RS00250
ABID97_RS00255: ABID97_RS00255 - type IV pilus twitching motility protein PilT, at 58,295 to 59,338
_RS00255
ABID97_RS00260: ABID97_RS00260 - PilT/PilU family type 4a pilus ATPase, at 59,366 to 60,502
_RS00260
Position (kb) 58
59
60 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 57.307 kb on + strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.307 kb on + strand, within ABID97_RS00245 at 57.308 kb on - strand, within ABID97_RS00245 at 57.308 kb on - strand, within ABID97_RS00245 at 57.411 kb on + strand, within ABID97_RS00245 at 57.412 kb on - strand, within ABID97_RS00245 at 57.507 kb on + strand, within ABID97_RS00245 at 57.507 kb on + strand, within ABID97_RS00245 at 57.508 kb on - strand, within ABID97_RS00245 at 57.508 kb on - strand, within ABID97_RS00245 at 57.558 kb on + strand at 58.211 kb on + strand at 58.211 kb on + strand at 58.212 kb on - strand at 58.212 kb on - strand at 58.212 kb on - strand at 58.244 kb on - strand at 58.304 kb on - strand at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.448 kb on + strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.449 kb on - strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.481 kb on + strand, within ABID97_RS00255 at 58.482 kb on - strand, within ABID97_RS00255 at 58.636 kb on - strand, within ABID97_RS00255 at 58.730 kb on + strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 58.731 kb on - strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.201 kb on + strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.202 kb on - strand, within ABID97_RS00255 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.985 kb on + strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260 at 59.986 kb on - strand, within ABID97_RS00260
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 57,307 + ABID97_RS00245 0.46 -0.5 57,307 + ABID97_RS00245 0.46 -0.2 57,307 + ABID97_RS00245 0.46 -0.4 57,307 + ABID97_RS00245 0.46 +2.5 57,308 - ABID97_RS00245 0.47 -0.6 57,308 - ABID97_RS00245 0.47 -0.4 57,411 + ABID97_RS00245 0.68 +1.4 57,412 - ABID97_RS00245 0.69 +2.5 57,507 + ABID97_RS00245 0.89 -1.6 57,507 + ABID97_RS00245 0.89 -0.6 57,508 - ABID97_RS00245 0.89 -0.2 57,508 - ABID97_RS00245 0.89 +0.7 57,558 + -0.4 58,211 + -0.2 58,211 + +0.0 58,212 - +0.7 58,212 - -0.9 58,212 - +0.3 58,244 - -0.2 58,304 - +0.5 58,448 + ABID97_RS00255 0.15 -2.7 58,448 + ABID97_RS00255 0.15 +0.0 58,448 + ABID97_RS00255 0.15 -2.1 58,448 + ABID97_RS00255 0.15 -1.3 58,449 - ABID97_RS00255 0.15 -1.8 58,449 - ABID97_RS00255 0.15 -2.2 58,449 - ABID97_RS00255 0.15 -1.9 58,449 - ABID97_RS00255 0.15 -1.3 58,481 + ABID97_RS00255 0.18 -2.1 58,481 + ABID97_RS00255 0.18 -2.3 58,481 + ABID97_RS00255 0.18 -2.6 58,482 - ABID97_RS00255 0.18 -1.7 58,636 - ABID97_RS00255 0.33 -0.3 58,730 + ABID97_RS00255 0.42 -3.0 58,731 - ABID97_RS00255 0.42 +0.0 58,731 - ABID97_RS00255 0.42 -3.1 58,731 - ABID97_RS00255 0.42 -1.1 58,731 - ABID97_RS00255 0.42 -1.3 58,731 - ABID97_RS00255 0.42 -2.3 59,201 + ABID97_RS00255 0.87 -0.9 59,201 + ABID97_RS00255 0.87 -4.1 59,201 + ABID97_RS00255 0.87 -1.6 59,201 + ABID97_RS00255 0.87 -2.6 59,201 + ABID97_RS00255 0.87 -2.0 59,202 - ABID97_RS00255 0.87 -0.6 59,202 - ABID97_RS00255 0.87 -0.0 59,202 - ABID97_RS00255 0.87 -2.2 59,202 - ABID97_RS00255 0.87 -2.5 59,202 - ABID97_RS00255 0.87 -3.7 59,202 - ABID97_RS00255 0.87 +0.9 59,202 - ABID97_RS00255 0.87 -1.6 59,985 + ABID97_RS00260 0.54 -0.1 59,985 + ABID97_RS00260 0.54 +0.2 59,985 + ABID97_RS00260 0.54 -0.2 59,985 + ABID97_RS00260 0.54 +0.2 59,985 + ABID97_RS00260 0.54 -0.2 59,985 + ABID97_RS00260 0.54 -0.1 59,986 - ABID97_RS00260 0.55 -0.3 59,986 - ABID97_RS00260 0.55 +1.7 59,986 - ABID97_RS00260 0.55 +0.2 59,986 - ABID97_RS00260 0.55 -0.0 59,986 - ABID97_RS00260 0.55 -0.3
Or see this region's nucleotide sequence