Strain Fitness in Escherichia coli BW25113 around b4231
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
4,450,666 | - | -0.0 | |||
4,450,668 | - | +0.2 | |||
4,450,675 | - | +1.0 | |||
4,450,702 | - | ytfT | b4230 | 0.11 | -0.5 |
4,450,708 | - | ytfT | b4230 | 0.11 | -2.0 |
4,450,716 | - | ytfT | b4230 | 0.12 | -0.8 |
4,450,755 | - | ytfT | b4230 | 0.16 | +0.5 |
4,450,755 | - | ytfT | b4230 | 0.16 | -1.9 |
4,450,760 | - | ytfT | b4230 | 0.16 | -0.1 |
4,450,765 | - | ytfT | b4230 | 0.17 | +1.5 |
4,450,765 | - | ytfT | b4230 | 0.17 | +1.7 |
4,450,826 | - | ytfT | b4230 | 0.23 | +1.8 |
4,450,832 | + | ytfT | b4230 | 0.23 | -1.9 |
4,450,843 | - | ytfT | b4230 | 0.24 | -0.1 |
4,450,853 | - | ytfT | b4230 | 0.25 | +0.6 |
4,450,858 | + | ytfT | b4230 | 0.26 | -0.3 |
4,450,865 | - | ytfT | b4230 | 0.26 | +1.5 |
4,450,865 | - | ytfT | b4230 | 0.26 | +1.5 |
4,451,166 | + | ytfT | b4230 | 0.56 | -1.1 |
4,451,218 | + | ytfT | b4230 | 0.61 | +1.7 |
4,451,218 | + | ytfT | b4230 | 0.61 | +1.6 |
4,451,226 | - | ytfT | b4230 | 0.62 | -0.4 |
4,451,287 | - | ytfT | b4230 | 0.68 | -0.3 |
4,451,298 | + | ytfT | b4230 | 0.69 | +0.2 |
4,451,302 | - | ytfT | b4230 | 0.69 | +0.2 |
4,451,302 | - | ytfT | b4230 | 0.69 | -2.3 |
4,451,360 | + | ytfT | b4230 | 0.75 | -1.7 |
4,451,473 | + | ytfT | b4230 | 0.86 | -0.1 |
4,451,586 | + | -1.3 | |||
4,451,586 | + | -0.9 | |||
4,451,598 | + | +1.1 | |||
4,451,598 | + | +0.2 | |||
4,451,606 | - | -0.5 | |||
4,451,646 | + | +0.1 | |||
4,451,775 | + | yjfF | b4231 | 0.17 | -0.4 |
4,451,775 | + | yjfF | b4231 | 0.17 | +0.2 |
4,451,791 | - | yjfF | b4231 | 0.19 | -0.9 |
4,451,830 | - | yjfF | b4231 | 0.22 | -0.5 |
4,451,830 | - | yjfF | b4231 | 0.22 | -0.1 |
4,451,944 | - | yjfF | b4231 | 0.34 | -0.5 |
4,452,005 | - | yjfF | b4231 | 0.40 | -0.7 |
4,452,005 | - | yjfF | b4231 | 0.40 | -0.1 |
4,452,046 | - | yjfF | b4231 | 0.44 | -3.0 |
4,452,046 | - | yjfF | b4231 | 0.44 | -0.5 |
4,452,131 | + | yjfF | b4231 | 0.53 | +0.2 |
4,452,132 | + | yjfF | b4231 | 0.53 | +0.2 |
4,452,169 | + | yjfF | b4231 | 0.57 | -1.9 |
4,452,169 | + | yjfF | b4231 | 0.57 | +0.5 |
4,452,187 | - | yjfF | b4231 | 0.58 | +0.4 |
4,452,307 | - | yjfF | b4231 | 0.70 | +0.3 |
4,452,398 | + | yjfF | b4231 | 0.80 | -0.1 |
4,452,406 | - | yjfF | b4231 | 0.80 | +1.1 |
4,452,406 | - | yjfF | b4231 | 0.80 | -0.4 |
4,452,442 | + | yjfF | b4231 | 0.84 | -0.9 |
4,452,471 | + | yjfF | b4231 | 0.87 | -2.0 |
4,452,555 | - | -1.2 | |||
4,452,623 | + | -1.1 | |||
4,452,623 | + | -1.3 | |||
4,452,627 | - | +0.7 | |||
4,452,685 | - | +0.7 | |||
4,452,709 | + | -1.0 | |||
4,452,770 | + | fbp | b4232 | 0.14 | +1.0 |
4,452,867 | - | fbp | b4232 | 0.23 | +4.3 |
4,452,869 | - | fbp | b4232 | 0.24 | +2.3 |
4,452,869 | - | fbp | b4232 | 0.24 | +0.1 |
4,452,906 | + | fbp | b4232 | 0.27 | -0.5 |
4,452,926 | + | fbp | b4232 | 0.29 | -3.1 |
4,452,934 | - | fbp | b4232 | 0.30 | -0.1 |
4,452,971 | + | fbp | b4232 | 0.34 | -1.9 |
4,452,989 | + | fbp | b4232 | 0.36 | +0.9 |
4,452,989 | + | fbp | b4232 | 0.36 | +1.1 |
4,453,022 | - | fbp | b4232 | 0.39 | -0.6 |
4,453,102 | + | fbp | b4232 | 0.47 | -0.3 |
4,453,105 | - | fbp | b4232 | 0.47 | +0.7 |
4,453,132 | - | fbp | b4232 | 0.50 | +0.4 |
4,453,139 | + | fbp | b4232 | 0.51 | +2.7 |
4,453,147 | + | fbp | b4232 | 0.51 | -0.7 |
4,453,147 | + | fbp | b4232 | 0.51 | +1.7 |
4,453,147 | + | fbp | b4232 | 0.51 | +0.5 |
4,453,155 | - | fbp | b4232 | 0.52 | -1.9 |
4,453,155 | - | fbp | b4232 | 0.52 | +0.3 |
4,453,226 | + | fbp | b4232 | 0.59 | +2.2 |
4,453,289 | + | fbp | b4232 | 0.66 | +0.0 |
4,453,289 | + | fbp | b4232 | 0.66 | -0.9 |
4,453,289 | + | fbp | b4232 | 0.66 | -0.9 |
4,453,306 | + | fbp | b4232 | 0.67 | -0.9 |
4,453,314 | - | fbp | b4232 | 0.68 | -1.3 |
4,453,368 | - | fbp | b4232 | 0.73 | +1.5 |
4,453,368 | - | fbp | b4232 | 0.73 | -0.4 |
4,453,368 | - | fbp | b4232 | 0.73 | -1.5 |
4,453,374 | - | fbp | b4232 | 0.74 | -1.0 |
4,453,380 | - | fbp | b4232 | 0.75 | +0.9 |
4,453,380 | - | fbp | b4232 | 0.75 | +1.2 |
4,453,391 | - | fbp | b4232 | 0.76 | +0.1 |
4,453,456 | + | fbp | b4232 | 0.82 | -0.0 |
4,453,456 | + | fbp | b4232 | 0.82 | +0.8 |
4,453,508 | - | fbp | b4232 | 0.87 | -2.3 |
4,453,518 | - | fbp | b4232 | 0.88 | +1.1 |
4,453,532 | - | fbp | b4232 | 0.90 | -0.1 |
4,453,562 | + | -1.9 | |||
4,453,569 | + | -0.3 | |||
4,453,580 | - | -0.1 | |||
4,453,580 | - | +1.5 |
Or see this region's nucleotide sequence