Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjdA and yjcZ overlap by 4 nucleotides yjcZ and proP are separated by 263 nucleotides
b4109: yjdA - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 4,325,158 to 4,327,386
yjdA
b4110: yjcZ - orf, hypothetical protein (VIMSS), at 4,327,383 to 4,328,261
yjcZ
b4111: proP - proline/glycine betaine transporter (NCBI), at 4,328,525 to 4,330,027
proP
Position (kb)
4327
4328
4329 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4326.398 kb on - strand, within yjdA at 4326.446 kb on - strand, within yjdA at 4326.612 kb on - strand, within yjdA at 4326.683 kb on + strand, within yjdA at 4326.734 kb on - strand, within yjdA at 4326.734 kb on - strand, within yjdA at 4326.766 kb on - strand, within yjdA at 4326.904 kb on + strand, within yjdA at 4326.912 kb on + strand, within yjdA at 4326.963 kb on + strand, within yjdA at 4327.073 kb on + strand, within yjdA at 4327.078 kb on + strand, within yjdA at 4327.078 kb on + strand, within yjdA at 4327.238 kb on + strand at 4327.238 kb on + strand at 4327.238 kb on + strand at 4327.238 kb on + strand at 4327.246 kb on - strand at 4327.246 kb on - strand at 4327.277 kb on - strand at 4327.406 kb on + strand at 4327.406 kb on + strand at 4327.406 kb on + strand at 4327.458 kb on - strand at 4327.468 kb on - strand at 4327.483 kb on - strand, within yjcZ at 4327.488 kb on + strand, within yjcZ at 4327.522 kb on + strand, within yjcZ at 4327.522 kb on + strand, within yjcZ at 4327.634 kb on - strand, within yjcZ at 4327.663 kb on + strand, within yjcZ at 4327.716 kb on - strand, within yjcZ at 4327.739 kb on + strand, within yjcZ at 4327.793 kb on + strand, within yjcZ at 4327.794 kb on + strand, within yjcZ at 4327.823 kb on - strand, within yjcZ at 4327.853 kb on + strand, within yjcZ at 4327.902 kb on + strand, within yjcZ at 4327.902 kb on + strand, within yjcZ at 4327.928 kb on + strand, within yjcZ at 4328.009 kb on + strand, within yjcZ at 4328.039 kb on + strand, within yjcZ at 4328.039 kb on + strand, within yjcZ at 4328.039 kb on + strand, within yjcZ at 4328.183 kb on + strand at 4328.200 kb on + strand at 4328.208 kb on - strand at 4328.208 kb on - strand at 4328.267 kb on + strand at 4328.267 kb on + strand at 4328.555 kb on + strand at 4328.555 kb on + strand at 4328.615 kb on + strand at 4328.729 kb on - strand, within proP at 4328.729 kb on - strand, within proP at 4328.729 kb on - strand, within proP at 4328.834 kb on + strand, within proP at 4328.834 kb on + strand, within proP at 4328.834 kb on - strand, within proP at 4328.840 kb on + strand, within proP at 4328.849 kb on + strand, within proP at 4328.854 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.865 kb on + strand, within proP at 4328.873 kb on - strand, within proP at 4328.873 kb on - strand, within proP at 4328.888 kb on + strand, within proP at 4328.888 kb on + strand, within proP at 4328.917 kb on + strand, within proP at 4328.954 kb on + strand, within proP at 4328.966 kb on - strand, within proP at 4328.986 kb on + strand, within proP at 4329.118 kb on + strand, within proP at 4329.144 kb on - strand, within proP at 4329.185 kb on + strand, within proP at 4329.237 kb on + strand, within proP at 4329.245 kb on + strand, within proP
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 4,326,398 - yjdA b4109 0.56 -1.4 4,326,446 - yjdA b4109 0.58 +0.8 4,326,612 - yjdA b4109 0.65 -1.8 4,326,683 + yjdA b4109 0.68 -0.8 4,326,734 - yjdA b4109 0.71 -2.1 4,326,734 - yjdA b4109 0.71 -0.4 4,326,766 - yjdA b4109 0.72 -2.6 4,326,904 + yjdA b4109 0.78 +0.0 4,326,912 + yjdA b4109 0.79 -0.7 4,326,963 + yjdA b4109 0.81 +0.0 4,327,073 + yjdA b4109 0.86 +0.0 4,327,078 + yjdA b4109 0.86 +0.5 4,327,078 + yjdA b4109 0.86 +1.2 4,327,238 + +1.3 4,327,238 + +1.4 4,327,238 + +0.3 4,327,238 + -1.4 4,327,246 - -1.4 4,327,246 - +0.3 4,327,277 - +1.0 4,327,406 + -0.5 4,327,406 + +0.6 4,327,406 + +2.6 4,327,458 - -0.2 4,327,468 - +0.6 4,327,483 - yjcZ b4110 0.11 -0.9 4,327,488 + yjcZ b4110 0.12 -0.2 4,327,522 + yjcZ b4110 0.16 -0.5 4,327,522 + yjcZ b4110 0.16 -1.8 4,327,634 - yjcZ b4110 0.29 -1.2 4,327,663 + yjcZ b4110 0.32 +1.2 4,327,716 - yjcZ b4110 0.38 +1.4 4,327,739 + yjcZ b4110 0.41 -1.7 4,327,793 + yjcZ b4110 0.47 +1.3 4,327,794 + yjcZ b4110 0.47 -1.1 4,327,823 - yjcZ b4110 0.50 +0.1 4,327,853 + yjcZ b4110 0.53 -1.4 4,327,902 + yjcZ b4110 0.59 -1.3 4,327,902 + yjcZ b4110 0.59 -0.7 4,327,928 + yjcZ b4110 0.62 -1.1 4,328,009 + yjcZ b4110 0.71 +0.0 4,328,039 + yjcZ b4110 0.75 -1.5 4,328,039 + yjcZ b4110 0.75 -1.0 4,328,039 + yjcZ b4110 0.75 -0.7 4,328,183 + -3.4 4,328,200 + -2.5 4,328,208 - +0.0 4,328,208 - +1.9 4,328,267 + +0.0 4,328,267 + -1.2 4,328,555 + +1.8 4,328,555 + +1.2 4,328,615 + +0.6 4,328,729 - proP b4111 0.14 +3.4 4,328,729 - proP b4111 0.14 +2.3 4,328,729 - proP b4111 0.14 +2.2 4,328,834 + proP b4111 0.21 -0.4 4,328,834 + proP b4111 0.21 -1.4 4,328,834 - proP b4111 0.21 +1.8 4,328,840 + proP b4111 0.21 +0.3 4,328,849 + proP b4111 0.22 -1.0 4,328,854 + proP b4111 0.22 -1.4 4,328,865 + proP b4111 0.23 -1.0 4,328,865 + proP b4111 0.23 +0.5 4,328,865 + proP b4111 0.23 -0.3 4,328,865 + proP b4111 0.23 +0.5 4,328,873 - proP b4111 0.23 +0.0 4,328,873 - proP b4111 0.23 -0.1 4,328,888 + proP b4111 0.24 +0.6 4,328,888 + proP b4111 0.24 -1.6 4,328,917 + proP b4111 0.26 -0.4 4,328,954 + proP b4111 0.29 +0.9 4,328,966 - proP b4111 0.29 +2.0 4,328,986 + proP b4111 0.31 +1.4 4,329,118 + proP b4111 0.39 +0.0 4,329,144 - proP b4111 0.41 +0.9 4,329,185 + proP b4111 0.44 +0.3 4,329,237 + proP b4111 0.47 -3.0 4,329,245 + proP b4111 0.48 -1.1
Or see this region's nucleotide sequence