Strain Fitness in Escherichia coli BW25113 around b3496

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuspA and yhiP are separated by 316 nucleotidesyhiP and yhiQ are separated by 48 nucleotidesyhiQ and prlC are separated by 7 nucleotides b3495: uspA - universal stress global response regulator (NCBI), at 3,638,134 to 3,638,568 uspA b3496: yhiP - predicted transporter (NCBI), at 3,638,885 to 3,640,354 yhiP b3497: yhiQ - predicted SAM-dependent methyltransferase (NCBI), at 3,640,403 to 3,641,155 yhiQ b3498: prlC - oligopeptidase A (NCBI), at 3,641,163 to 3,643,205 prlC Position (kb) 3638 3639 3640 3641Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3637.909 kb on + strandat 3637.909 kb on + strandat 3637.926 kb on - strandat 3637.969 kb on - strandat 3638.006 kb on - strandat 3638.014 kb on + strandat 3638.033 kb on + strandat 3638.053 kb on - strandat 3638.079 kb on - strandat 3638.083 kb on + strandat 3638.090 kb on - strandat 3638.100 kb on - strandat 3638.203 kb on - strand, within uspAat 3638.203 kb on - strand, within uspAat 3638.205 kb on + strand, within uspAat 3638.207 kb on + strand, within uspAat 3638.207 kb on + strand, within uspAat 3638.211 kb on - strand, within uspAat 3638.213 kb on - strand, within uspAat 3638.215 kb on + strand, within uspAat 3638.215 kb on + strand, within uspAat 3638.225 kb on - strand, within uspAat 3638.266 kb on + strand, within uspAat 3638.266 kb on + strand, within uspAat 3638.266 kb on + strand, within uspAat 3638.266 kb on + strand, within uspAat 3638.268 kb on + strand, within uspAat 3638.274 kb on - strand, within uspAat 3638.276 kb on - strand, within uspAat 3638.318 kb on + strand, within uspAat 3638.333 kb on + strand, within uspAat 3638.333 kb on + strand, within uspAat 3638.338 kb on + strand, within uspAat 3638.345 kb on - strand, within uspAat 3638.345 kb on - strand, within uspAat 3638.383 kb on + strand, within uspAat 3638.386 kb on + strand, within uspAat 3638.386 kb on + strand, within uspAat 3638.395 kb on + strand, within uspAat 3638.395 kb on + strand, within uspAat 3638.408 kb on + strand, within uspAat 3638.408 kb on + strand, within uspAat 3638.412 kb on + strand, within uspAat 3638.412 kb on + strand, within uspAat 3638.455 kb on - strand, within uspAat 3638.495 kb on + strand, within uspAat 3638.511 kb on + strand, within uspAat 3638.511 kb on + strand, within uspAat 3638.519 kb on - strand, within uspAat 3638.530 kb on + strandat 3638.536 kb on - strandat 3638.536 kb on - strandat 3638.542 kb on + strandat 3638.550 kb on - strandat 3638.561 kb on - strandat 3638.582 kb on + strandat 3638.582 kb on + strandat 3638.630 kb on + strandat 3638.638 kb on + strandat 3638.639 kb on - strandat 3638.639 kb on - strandat 3638.649 kb on - strandat 3638.649 kb on - strandat 3638.675 kb on + strandat 3638.683 kb on - strandat 3638.683 kb on - strandat 3638.755 kb on + strandat 3638.769 kb on - strandat 3638.821 kb on - strandat 3638.845 kb on + strandat 3638.861 kb on - strandat 3638.861 kb on - strandat 3638.863 kb on - strandat 3638.865 kb on + strandat 3638.873 kb on - strandat 3638.873 kb on - strandat 3638.873 kb on - strandat 3638.887 kb on + strandat 3638.887 kb on + strandat 3638.907 kb on - strandat 3638.909 kb on - strandat 3638.909 kb on - strandat 3638.918 kb on - strandat 3638.984 kb on - strandat 3638.984 kb on - strandat 3639.014 kb on - strandat 3639.109 kb on - strand, within yhiPat 3639.109 kb on - strand, within yhiPat 3639.145 kb on - strand, within yhiPat 3639.145 kb on - strand, within yhiPat 3639.184 kb on + strand, within yhiPat 3639.190 kb on + strand, within yhiPat 3639.190 kb on + strand, within yhiPat 3639.198 kb on - strand, within yhiPat 3639.215 kb on + strand, within yhiPat 3639.265 kb on - strand, within yhiPat 3639.265 kb on - strand, within yhiPat 3639.327 kb on + strand, within yhiPat 3639.327 kb on + strand, within yhiPat 3639.330 kb on + strand, within yhiPat 3639.330 kb on + strand, within yhiPat 3639.333 kb on - strand, within yhiPat 3639.336 kb on - strand, within yhiPat 3639.359 kb on + strand, within yhiPat 3639.402 kb on - strand, within yhiPat 3639.408 kb on + strand, within yhiPat 3639.408 kb on + strand, within yhiPat 3639.428 kb on + strand, within yhiPat 3639.448 kb on + strand, within yhiPat 3639.448 kb on + strand, within yhiPat 3639.456 kb on - strand, within yhiPat 3639.456 kb on - strand, within yhiPat 3639.481 kb on - strand, within yhiPat 3639.534 kb on - strand, within yhiPat 3639.585 kb on + strand, within yhiPat 3639.593 kb on - strand, within yhiPat 3639.704 kb on - strand, within yhiPat 3639.704 kb on - strand, within yhiPat 3639.747 kb on + strandat 3639.747 kb on + strand, within yhiPat 3639.836 kb on + strand, within yhiPat 3639.859 kb on - strand, within yhiPat 3639.859 kb on - strand, within yhiPat 3639.861 kb on + strand, within yhiPat 3639.861 kb on + strand, within yhiPat 3639.869 kb on - strand, within yhiPat 3639.869 kb on - strand, within yhiPat 3639.876 kb on + strand, within yhiPat 3639.892 kb on + strand, within yhiPat 3639.892 kb on + strand, within yhiPat 3639.900 kb on - strand, within yhiPat 3639.937 kb on + strand, within yhiPat 3639.937 kb on + strand, within yhiPat 3640.007 kb on - strand, within yhiPat 3640.007 kb on - strand, within yhiPat 3640.020 kb on - strand, within yhiPat 3640.026 kb on + strand, within yhiPat 3640.051 kb on + strand, within yhiPat 3640.058 kb on + strand, within yhiPat 3640.085 kb on - strand, within yhiPat 3640.095 kb on + strand, within yhiPat 3640.105 kb on + strand, within yhiPat 3640.114 kb on - strand, within yhiPat 3640.225 kb on + strandat 3640.235 kb on + strandat 3640.235 kb on + strandat 3640.237 kb on + strandat 3640.241 kb on + strandat 3640.241 kb on + strandat 3640.253 kb on - strandat 3640.271 kb on - strandat 3640.290 kb on - strandat 3640.292 kb on + strandat 3640.295 kb on - strandat 3640.298 kb on - strandat 3640.303 kb on + strandat 3640.326 kb on - strandat 3640.326 kb on - strandat 3640.347 kb on + strandat 3640.368 kb on + strandat 3640.376 kb on - strandat 3640.378 kb on + strandat 3640.416 kb on + strandat 3640.416 kb on + strandat 3640.416 kb on + strandat 3640.416 kb on + strandat 3640.436 kb on - strandat 3640.488 kb on + strand, within yhiQat 3640.488 kb on + strand, within yhiQat 3640.510 kb on - strand, within yhiQat 3640.627 kb on - strand, within yhiQat 3640.627 kb on - strand, within yhiQat 3640.641 kb on - strand, within yhiQat 3640.664 kb on - strand, within yhiQat 3640.664 kb on - strand, within yhiQat 3640.669 kb on + strand, within yhiQat 3640.677 kb on - strand, within yhiQat 3640.677 kb on - strand, within yhiQat 3640.677 kb on - strand, within yhiQat 3640.677 kb on - strand, within yhiQat 3640.677 kb on - strand, within yhiQat 3640.687 kb on + strand, within yhiQat 3640.687 kb on + strand, within yhiQat 3640.729 kb on - strand, within yhiQat 3640.731 kb on - strand, within yhiQat 3640.781 kb on - strand, within yhiQat 3640.802 kb on - strand, within yhiQat 3640.830 kb on + strand, within yhiQat 3640.835 kb on + strand, within yhiQat 3640.848 kb on - strand, within yhiQat 3640.861 kb on + strand, within yhiQat 3640.903 kb on - strand, within yhiQat 3640.932 kb on - strand, within yhiQat 3641.043 kb on + strand, within yhiQat 3641.071 kb on - strand, within yhiQat 3641.078 kb on + strand, within yhiQat 3641.119 kb on + strandat 3641.166 kb on + strandat 3641.166 kb on + strandat 3641.174 kb on - strandat 3641.174 kb on - strandat 3641.174 kb on - strandat 3641.199 kb on - strandat 3641.215 kb on - strandat 3641.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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3,637,909 + -0.0
3,637,909 + -0.0
3,637,926 - -0.4
3,637,969 - +2.9
3,638,006 - -1.4
3,638,014 + -1.1
3,638,033 + +0.7
3,638,053 - +0.7
3,638,079 - -0.6
3,638,083 + +1.5
3,638,090 - +0.3
3,638,100 - -1.3
3,638,203 - uspA b3495 0.16 -1.4
3,638,203 - uspA b3495 0.16 -0.6
3,638,205 + uspA b3495 0.16 +1.3
3,638,207 + uspA b3495 0.17 -1.4
3,638,207 + uspA b3495 0.17 +0.3
3,638,211 - uspA b3495 0.18 +1.8
3,638,213 - uspA b3495 0.18 +1.4
3,638,215 + uspA b3495 0.19 +0.6
3,638,215 + uspA b3495 0.19 +2.5
3,638,225 - uspA b3495 0.21 +0.3
3,638,266 + uspA b3495 0.30 +0.6
3,638,266 + uspA b3495 0.30 +0.2
3,638,266 + uspA b3495 0.30 -1.4
3,638,266 + uspA b3495 0.30 +1.3
3,638,268 + uspA b3495 0.31 +0.7
3,638,274 - uspA b3495 0.32 -0.1
3,638,276 - uspA b3495 0.33 +0.6
3,638,318 + uspA b3495 0.42 -0.7
3,638,333 + uspA b3495 0.46 +1.8
3,638,333 + uspA b3495 0.46 +1.0
3,638,338 + uspA b3495 0.47 -1.0
3,638,345 - uspA b3495 0.49 -1.2
3,638,345 - uspA b3495 0.49 +0.3
3,638,383 + uspA b3495 0.57 -0.2
3,638,386 + uspA b3495 0.58 +2.4
3,638,386 + uspA b3495 0.58 +1.0
3,638,395 + uspA b3495 0.60 -1.4
3,638,395 + uspA b3495 0.60 +0.7
3,638,408 + uspA b3495 0.63 +0.5
3,638,408 + uspA b3495 0.63 -0.6
3,638,412 + uspA b3495 0.64 +0.1
3,638,412 + uspA b3495 0.64 +0.2
3,638,455 - uspA b3495 0.74 +2.2
3,638,495 + uspA b3495 0.83 -1.6
3,638,511 + uspA b3495 0.87 -0.3
3,638,511 + uspA b3495 0.87 +0.9
3,638,519 - uspA b3495 0.89 +0.7
3,638,530 + -0.1
3,638,536 - +0.5
3,638,536 - -0.5
3,638,542 + +0.2
3,638,550 - +0.7
3,638,561 - +0.1
3,638,582 + +0.2
3,638,582 + +1.0
3,638,630 + +2.7
3,638,638 + -0.8
3,638,639 - +1.6
3,638,639 - -0.0
3,638,649 - +0.8
3,638,649 - +0.7
3,638,675 + -1.0
3,638,683 - +0.2
3,638,683 - +2.6
3,638,755 + -2.0
3,638,769 - +0.1
3,638,821 - +0.1
3,638,845 + -1.2
3,638,861 - +1.1
3,638,861 - +1.2
3,638,863 - -0.9
3,638,865 + -1.5
3,638,873 - +1.7
3,638,873 - -0.8
3,638,873 - +1.8
3,638,887 + +0.4
3,638,887 + -1.8
3,638,907 - +0.4
3,638,909 - +1.0
3,638,909 - +2.7
3,638,918 - +1.2
3,638,984 - +2.9
3,638,984 - +3.2
3,639,014 - +0.3
3,639,109 - yhiP b3496 0.15 +1.9
3,639,109 - yhiP b3496 0.15 +1.5
3,639,145 - yhiP b3496 0.18 +2.7
3,639,145 - yhiP b3496 0.18 +1.0
3,639,184 + yhiP b3496 0.20 +3.2
3,639,190 + yhiP b3496 0.21 -0.0
3,639,190 + yhiP b3496 0.21 +2.6
3,639,198 - yhiP b3496 0.21 +2.4
3,639,215 + yhiP b3496 0.22 +2.0
3,639,265 - yhiP b3496 0.26 +1.3
3,639,265 - yhiP b3496 0.26 +2.8
3,639,327 + yhiP b3496 0.30 +0.6
3,639,327 + yhiP b3496 0.30 +1.0
3,639,330 + yhiP b3496 0.30 +0.3
3,639,330 + yhiP b3496 0.30 +0.3
3,639,333 - yhiP b3496 0.30 +1.8
3,639,336 - yhiP b3496 0.31 -1.6
3,639,359 + yhiP b3496 0.32 +1.2
3,639,402 - yhiP b3496 0.35 +2.4
3,639,408 + yhiP b3496 0.36 +0.6
3,639,408 + yhiP b3496 0.36 +1.7
3,639,428 + yhiP b3496 0.37 +1.4
3,639,448 + yhiP b3496 0.38 +1.2
3,639,448 + yhiP b3496 0.38 -1.6
3,639,456 - yhiP b3496 0.39 +2.0
3,639,456 - yhiP b3496 0.39 +0.4
3,639,481 - yhiP b3496 0.41 +1.1
3,639,534 - yhiP b3496 0.44 +1.6
3,639,585 + yhiP b3496 0.48 +1.3
3,639,593 - yhiP b3496 0.48 +0.2
3,639,704 - yhiP b3496 0.56 +2.0
3,639,704 - yhiP b3496 0.56 +1.2
3,639,747 + +1.6
3,639,747 + yhiP b3496 0.59 +2.8
3,639,836 + yhiP b3496 0.65 +1.0
3,639,859 - yhiP b3496 0.66 +0.6
3,639,859 - yhiP b3496 0.66 +3.3
3,639,861 + yhiP b3496 0.66 +3.2
3,639,861 + yhiP b3496 0.66 +1.9
3,639,869 - yhiP b3496 0.67 +0.7
3,639,869 - yhiP b3496 0.67 +1.6
3,639,876 + yhiP b3496 0.67 +2.2
3,639,892 + yhiP b3496 0.69 +1.0
3,639,892 + yhiP b3496 0.69 +2.3
3,639,900 - yhiP b3496 0.69 +0.2
3,639,937 + yhiP b3496 0.72 +0.6
3,639,937 + yhiP b3496 0.72 -0.4
3,640,007 - yhiP b3496 0.76 -0.2
3,640,007 - yhiP b3496 0.76 +1.0
3,640,020 - yhiP b3496 0.77 +2.2
3,640,026 + yhiP b3496 0.78 +0.3
3,640,051 + yhiP b3496 0.79 +1.3
3,640,058 + yhiP b3496 0.80 +1.0
3,640,085 - yhiP b3496 0.82 +2.6
3,640,095 + yhiP b3496 0.82 +1.6
3,640,105 + yhiP b3496 0.83 +2.6
3,640,114 - yhiP b3496 0.84 +2.4
3,640,225 + +2.2
3,640,235 + +1.6
3,640,235 + +1.7
3,640,237 + +2.4
3,640,241 + +0.8
3,640,241 + +0.7
3,640,253 - +2.5
3,640,271 - +2.2
3,640,290 - -0.0
3,640,292 + +1.3
3,640,295 - +2.3
3,640,298 - +1.8
3,640,303 + +1.5
3,640,326 - +1.3
3,640,326 - -0.6
3,640,347 + +1.4
3,640,368 + +1.6
3,640,376 - -0.0
3,640,378 + -0.8
3,640,416 + +0.6
3,640,416 + -2.1
3,640,416 + -2.1
3,640,416 + -0.4
3,640,436 - -0.8
3,640,488 + yhiQ b3497 0.11 -0.0
3,640,488 + yhiQ b3497 0.11 +0.6
3,640,510 - yhiQ b3497 0.14 +1.9
3,640,627 - yhiQ b3497 0.30 -1.0
3,640,627 - yhiQ b3497 0.30 +1.0
3,640,641 - yhiQ b3497 0.32 +1.6
3,640,664 - yhiQ b3497 0.35 +1.4
3,640,664 - yhiQ b3497 0.35 +0.7
3,640,669 + yhiQ b3497 0.35 -1.2
3,640,677 - yhiQ b3497 0.36 -0.1
3,640,677 - yhiQ b3497 0.36 +1.6
3,640,677 - yhiQ b3497 0.36 +1.6
3,640,677 - yhiQ b3497 0.36 -0.9
3,640,677 - yhiQ b3497 0.36 -0.7
3,640,687 + yhiQ b3497 0.38 +0.6
3,640,687 + yhiQ b3497 0.38 +1.9
3,640,729 - yhiQ b3497 0.43 -1.0
3,640,731 - yhiQ b3497 0.44 -0.1
3,640,781 - yhiQ b3497 0.50 +0.1
3,640,802 - yhiQ b3497 0.53 -1.0
3,640,830 + yhiQ b3497 0.57 +2.2
3,640,835 + yhiQ b3497 0.57 +1.1
3,640,848 - yhiQ b3497 0.59 +2.4
3,640,861 + yhiQ b3497 0.61 -0.9
3,640,903 - yhiQ b3497 0.66 -0.7
3,640,932 - yhiQ b3497 0.70 +1.3
3,641,043 + yhiQ b3497 0.85 +1.8
3,641,071 - yhiQ b3497 0.89 -1.2
3,641,078 + yhiQ b3497 0.90 -1.4
3,641,119 + -0.4
3,641,166 + -1.4
3,641,166 + +2.6
3,641,174 - -0.2
3,641,174 - -2.1
3,641,174 - -0.7
3,641,199 - -0.2
3,641,215 - -2.8
3,641,224 + -1.4

Or see this region's nucleotide sequence