Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt relA and rumA are separated by 47 nucleotides rumA and barA are separated by 56 nucleotides
b2784: relA - (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI), at 2,909,439 to 2,911,673
relA
b2785: rumA - 23S rRNA (uracil-5-)-methyltransferase (NCBI), at 2,911,721 to 2,913,022
rumA
b2786: barA - hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI), at 2,913,079 to 2,915,835
barA
Position (kb)
2911
2912
2913
2914 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2910.721 kb on - strand, within relA at 2910.721 kb on - strand, within relA at 2910.721 kb on - strand, within relA at 2910.788 kb on - strand, within relA at 2910.788 kb on - strand, within relA at 2910.788 kb on - strand, within relA at 2910.895 kb on - strand, within relA at 2910.895 kb on - strand, within relA at 2910.898 kb on + strand, within relA at 2910.898 kb on + strand, within relA at 2910.921 kb on + strand, within relA at 2910.921 kb on + strand, within relA at 2910.985 kb on + strand, within relA at 2911.020 kb on - strand, within relA at 2911.134 kb on - strand, within relA at 2911.196 kb on + strand, within relA at 2911.201 kb on + strand, within relA at 2911.201 kb on + strand, within relA at 2911.283 kb on + strand, within relA at 2911.283 kb on + strand, within relA at 2911.283 kb on + strand, within relA at 2911.297 kb on + strand, within relA at 2911.300 kb on - strand, within relA at 2911.301 kb on - strand, within relA at 2911.301 kb on - strand, within relA at 2911.331 kb on + strand, within relA at 2911.331 kb on + strand, within relA at 2911.360 kb on - strand, within relA at 2911.456 kb on - strand at 2911.488 kb on - strand at 2911.525 kb on + strand at 2911.525 kb on + strand at 2911.568 kb on - strand at 2911.568 kb on - strand at 2911.572 kb on + strand at 2911.572 kb on + strand at 2911.598 kb on + strand at 2911.690 kb on - strand at 2911.795 kb on - strand at 2911.851 kb on + strand at 2911.851 kb on + strand at 2911.854 kb on + strand, within rumA at 2911.859 kb on + strand, within rumA at 2911.860 kb on - strand, within rumA at 2911.861 kb on - strand, within rumA at 2911.870 kb on + strand, within rumA at 2911.903 kb on + strand, within rumA at 2911.931 kb on - strand, within rumA at 2911.978 kb on - strand, within rumA at 2912.077 kb on + strand, within rumA at 2912.087 kb on + strand, within rumA at 2912.087 kb on + strand, within rumA at 2912.117 kb on - strand, within rumA at 2912.168 kb on + strand, within rumA at 2912.263 kb on + strand, within rumA at 2912.343 kb on - strand, within rumA at 2912.387 kb on + strand, within rumA at 2912.433 kb on + strand, within rumA at 2912.462 kb on + strand, within rumA at 2912.465 kb on - strand, within rumA at 2912.480 kb on + strand, within rumA at 2912.556 kb on + strand, within rumA at 2912.559 kb on + strand, within rumA at 2912.646 kb on + strand, within rumA at 2912.654 kb on - strand, within rumA at 2912.668 kb on + strand, within rumA at 2912.668 kb on + strand, within rumA at 2912.668 kb on + strand, within rumA at 2912.668 kb on + strand, within rumA at 2912.709 kb on + strand, within rumA at 2912.709 kb on + strand, within rumA at 2912.709 kb on - strand, within rumA at 2912.738 kb on + strand, within rumA at 2912.954 kb on - strand at 2912.975 kb on + strand at 2912.975 kb on + strand at 2912.986 kb on + strand at 2913.047 kb on + strand at 2913.094 kb on - strand at 2913.119 kb on + strand at 2913.177 kb on + strand at 2913.177 kb on + strand at 2913.184 kb on + strand at 2913.184 kb on - strand at 2913.213 kb on + strand at 2913.218 kb on + strand at 2913.218 kb on + strand at 2913.218 kb on + strand at 2913.223 kb on + strand at 2913.252 kb on + strand at 2913.257 kb on - strand at 2913.258 kb on + strand at 2913.288 kb on + strand at 2913.288 kb on + strand at 2913.288 kb on + strand at 2913.288 kb on + strand at 2913.294 kb on - strand at 2913.294 kb on - strand at 2913.296 kb on - strand at 2913.298 kb on + strand at 2913.315 kb on + strand at 2913.323 kb on - strand at 2913.323 kb on - strand at 2913.361 kb on + strand, within barA at 2913.361 kb on + strand, within barA at 2913.395 kb on + strand, within barA at 2913.403 kb on + strand, within barA at 2913.403 kb on - strand, within barA at 2913.408 kb on + strand, within barA at 2913.424 kb on - strand, within barA at 2913.428 kb on - strand, within barA at 2913.428 kb on - strand, within barA at 2913.430 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.435 kb on + strand, within barA at 2913.437 kb on + strand, within barA at 2913.439 kb on + strand, within barA at 2913.442 kb on - strand, within barA at 2913.443 kb on - strand, within barA at 2913.448 kb on - strand, within barA at 2913.458 kb on + strand, within barA at 2913.466 kb on - strand, within barA at 2913.468 kb on + strand, within barA at 2913.468 kb on + strand, within barA at 2913.478 kb on - strand, within barA at 2913.478 kb on - strand, within barA at 2913.478 kb on - strand, within barA at 2913.478 kb on - strand, within barA at 2913.490 kb on + strand, within barA at 2913.494 kb on - strand, within barA at 2913.495 kb on + strand, within barA at 2913.498 kb on + strand, within barA at 2913.513 kb on + strand, within barA at 2913.518 kb on + strand, within barA at 2913.518 kb on + strand, within barA at 2913.526 kb on - strand, within barA at 2913.549 kb on + strand, within barA at 2913.580 kb on - strand, within barA at 2913.580 kb on - strand, within barA at 2913.587 kb on + strand, within barA at 2913.594 kb on - strand, within barA at 2913.643 kb on + strand, within barA at 2913.675 kb on - strand, within barA at 2913.675 kb on - strand, within barA at 2913.680 kb on + strand, within barA at 2913.680 kb on + strand, within barA at 2913.682 kb on + strand, within barA at 2913.682 kb on + strand, within barA at 2913.688 kb on - strand, within barA at 2913.688 kb on - strand, within barA at 2913.688 kb on - strand, within barA at 2913.688 kb on - strand, within barA at 2913.702 kb on - strand, within barA at 2913.702 kb on - strand, within barA at 2913.703 kb on + strand, within barA at 2913.703 kb on + strand, within barA at 2913.705 kb on + strand, within barA at 2913.705 kb on + strand, within barA at 2913.713 kb on - strand, within barA at 2913.713 kb on - strand, within barA at 2913.713 kb on - strand, within barA at 2913.720 kb on - strand, within barA at 2913.721 kb on - strand, within barA at 2913.721 kb on - strand, within barA at 2913.739 kb on + strand, within barA at 2913.739 kb on + strand, within barA at 2913.739 kb on + strand, within barA at 2913.744 kb on - strand, within barA at 2913.744 kb on - strand, within barA at 2913.747 kb on - strand, within barA at 2913.747 kb on - strand, within barA at 2913.747 kb on - strand, within barA at 2913.766 kb on - strand, within barA at 2913.782 kb on - strand, within barA at 2913.813 kb on + strand, within barA at 2913.836 kb on - strand, within barA at 2913.836 kb on - strand, within barA at 2913.848 kb on + strand, within barA at 2913.848 kb on + strand, within barA at 2913.848 kb on + strand, within barA at 2913.848 kb on + strand, within barA at 2913.858 kb on + strand, within barA at 2913.858 kb on + strand, within barA at 2913.863 kb on + strand, within barA at 2913.863 kb on + strand, within barA at 2913.910 kb on + strand, within barA at 2913.910 kb on + strand, within barA at 2913.933 kb on + strand, within barA at 2913.933 kb on + strand, within barA at 2913.935 kb on + strand, within barA at 2913.935 kb on + strand, within barA at 2913.983 kb on - strand, within barA at 2913.984 kb on - strand, within barA at 2913.985 kb on + strand, within barA at 2913.987 kb on + strand, within barA at 2913.990 kb on + strand, within barA at 2913.990 kb on + strand, within barA at 2913.990 kb on + strand, within barA at 2913.990 kb on + strand, within barA at 2913.990 kb on + strand, within barA at 2913.990 kb on + strand, within barA at 2913.997 kb on + strand, within barA at 2913.997 kb on - strand, within barA at 2913.998 kb on - strand, within barA at 2913.998 kb on - strand, within barA at 2913.999 kb on + strand, within barA at 2914.000 kb on - strand, within barA at 2914.000 kb on - strand, within barA at 2914.000 kb on - strand, within barA at 2914.000 kb on - strand, within barA at 2914.002 kb on + strand, within barA at 2914.002 kb on + strand, within barA at 2914.002 kb on + strand, within barA at 2914.002 kb on + strand, within barA at 2914.005 kb on - strand, within barA at 2914.017 kb on - strand, within barA at 2914.017 kb on - strand, within barA at 2914.017 kb on - strand, within barA at 2914.018 kb on - strand, within barA at 2914.018 kb on - strand, within barA at 2914.019 kb on - strand, within barA
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 2,910,721 - relA b2784 0.57 +1.5 2,910,721 - relA b2784 0.57 +1.2 2,910,721 - relA b2784 0.57 +1.7 2,910,788 - relA b2784 0.60 -2.2 2,910,788 - relA b2784 0.60 +1.5 2,910,788 - relA b2784 0.60 -0.2 2,910,895 - relA b2784 0.65 -1.4 2,910,895 - relA b2784 0.65 -1.7 2,910,898 + relA b2784 0.65 +1.7 2,910,898 + relA b2784 0.65 +0.8 2,910,921 + relA b2784 0.66 +2.2 2,910,921 + relA b2784 0.66 +1.2 2,910,985 + relA b2784 0.69 -0.8 2,911,020 - relA b2784 0.71 -1.0 2,911,134 - relA b2784 0.76 +1.6 2,911,196 + relA b2784 0.79 +1.7 2,911,201 + relA b2784 0.79 -0.7 2,911,201 + relA b2784 0.79 +0.5 2,911,283 + relA b2784 0.83 +0.2 2,911,283 + relA b2784 0.83 +1.2 2,911,283 + relA b2784 0.83 -0.4 2,911,297 + relA b2784 0.83 -0.4 2,911,300 - relA b2784 0.83 -1.2 2,911,301 - relA b2784 0.83 +0.6 2,911,301 - relA b2784 0.83 +1.2 2,911,331 + relA b2784 0.85 +2.2 2,911,331 + relA b2784 0.85 -1.4 2,911,360 - relA b2784 0.86 -0.4 2,911,456 - +0.9 2,911,488 - +1.6 2,911,525 + +1.7 2,911,525 + +2.3 2,911,568 - -1.2 2,911,568 - -1.8 2,911,572 + -0.8 2,911,572 + -3.2 2,911,598 + +3.4 2,911,690 - +2.0 2,911,795 - -1.4 2,911,851 + -0.8 2,911,851 + -0.8 2,911,854 + rumA b2785 0.10 -0.4 2,911,859 + rumA b2785 0.11 -0.8 2,911,860 - rumA b2785 0.11 +1.2 2,911,861 - rumA b2785 0.11 +1.8 2,911,870 + rumA b2785 0.11 +1.4 2,911,903 + rumA b2785 0.14 -2.3 2,911,931 - rumA b2785 0.16 -1.2 2,911,978 - rumA b2785 0.20 +1.3 2,912,077 + rumA b2785 0.27 +0.5 2,912,087 + rumA b2785 0.28 +0.5 2,912,087 + rumA b2785 0.28 +1.2 2,912,117 - rumA b2785 0.30 +1.0 2,912,168 + rumA b2785 0.34 -1.2 2,912,263 + rumA b2785 0.42 +1.2 2,912,343 - rumA b2785 0.48 +2.3 2,912,387 + rumA b2785 0.51 -1.0 2,912,433 + rumA b2785 0.55 +0.4 2,912,462 + rumA b2785 0.57 -2.0 2,912,465 - rumA b2785 0.57 +1.7 2,912,480 + rumA b2785 0.58 -2.4 2,912,556 + rumA b2785 0.64 +0.6 2,912,559 + rumA b2785 0.64 +0.3 2,912,646 + rumA b2785 0.71 -1.3 2,912,654 - rumA b2785 0.72 +1.5 2,912,668 + rumA b2785 0.73 +0.6 2,912,668 + rumA b2785 0.73 +1.7 2,912,668 + rumA b2785 0.73 +1.4 2,912,668 + rumA b2785 0.73 -1.2 2,912,709 + rumA b2785 0.76 +0.3 2,912,709 + rumA b2785 0.76 +0.0 2,912,709 - rumA b2785 0.76 +0.9 2,912,738 + rumA b2785 0.78 +0.7 2,912,954 - -1.2 2,912,975 + -1.8 2,912,975 + +0.9 2,912,986 + -0.8 2,913,047 + -2.4 2,913,094 - +1.9 2,913,119 + +1.2 2,913,177 + -3.2 2,913,177 + -0.8 2,913,184 + +0.6 2,913,184 - -1.4 2,913,213 + -0.5 2,913,218 + -1.4 2,913,218 + +0.5 2,913,218 + -1.8 2,913,223 + +1.2 2,913,252 + +1.5 2,913,257 - +0.2 2,913,258 + +1.5 2,913,288 + +1.2 2,913,288 + +0.8 2,913,288 + +0.3 2,913,288 + -0.8 2,913,294 - -0.1 2,913,294 - +0.2 2,913,296 - -1.7 2,913,298 + +0.7 2,913,315 + -1.8 2,913,323 - -0.3 2,913,323 - +1.2 2,913,361 + barA b2786 0.10 +0.0 2,913,361 + barA b2786 0.10 +0.8 2,913,395 + barA b2786 0.11 -0.5 2,913,403 + barA b2786 0.12 -0.4 2,913,403 - barA b2786 0.12 +1.2 2,913,408 + barA b2786 0.12 -0.6 2,913,424 - barA b2786 0.13 -0.2 2,913,428 - barA b2786 0.13 -0.8 2,913,428 - barA b2786 0.13 +1.9 2,913,430 + barA b2786 0.13 -0.7 2,913,435 + barA b2786 0.13 -0.5 2,913,435 + barA b2786 0.13 +1.8 2,913,435 + barA b2786 0.13 +1.9 2,913,435 + barA b2786 0.13 -0.7 2,913,435 + barA b2786 0.13 -0.7 2,913,435 + barA b2786 0.13 -1.1 2,913,435 + barA b2786 0.13 -1.3 2,913,437 + barA b2786 0.13 +0.2 2,913,439 + barA b2786 0.13 +2.2 2,913,442 - barA b2786 0.13 +1.0 2,913,443 - barA b2786 0.13 -1.7 2,913,448 - barA b2786 0.13 -0.5 2,913,458 + barA b2786 0.14 +1.9 2,913,466 - barA b2786 0.14 +0.4 2,913,468 + barA b2786 0.14 +0.6 2,913,468 + barA b2786 0.14 -0.8 2,913,478 - barA b2786 0.14 -0.4 2,913,478 - barA b2786 0.14 +2.3 2,913,478 - barA b2786 0.14 +2.6 2,913,478 - barA b2786 0.14 +0.4 2,913,490 + barA b2786 0.15 +1.0 2,913,494 - barA b2786 0.15 -0.3 2,913,495 + barA b2786 0.15 +1.0 2,913,498 + barA b2786 0.15 -0.3 2,913,513 + barA b2786 0.16 +0.5 2,913,518 + barA b2786 0.16 -0.7 2,913,518 + barA b2786 0.16 +0.1 2,913,526 - barA b2786 0.16 -0.4 2,913,549 + barA b2786 0.17 -0.1 2,913,580 - barA b2786 0.18 +1.9 2,913,580 - barA b2786 0.18 +1.2 2,913,587 + barA b2786 0.18 -2.3 2,913,594 - barA b2786 0.19 -1.8 2,913,643 + barA b2786 0.20 -0.1 2,913,675 - barA b2786 0.22 +1.7 2,913,675 - barA b2786 0.22 +1.2 2,913,680 + barA b2786 0.22 -0.6 2,913,680 + barA b2786 0.22 +1.4 2,913,682 + barA b2786 0.22 -0.8 2,913,682 + barA b2786 0.22 +0.6 2,913,688 - barA b2786 0.22 +0.1 2,913,688 - barA b2786 0.22 -0.8 2,913,688 - barA b2786 0.22 -1.2 2,913,688 - barA b2786 0.22 +0.9 2,913,702 - barA b2786 0.23 -2.4 2,913,702 - barA b2786 0.23 +1.9 2,913,703 + barA b2786 0.23 -0.4 2,913,703 + barA b2786 0.23 -1.7 2,913,705 + barA b2786 0.23 -1.1 2,913,705 + barA b2786 0.23 +1.5 2,913,713 - barA b2786 0.23 -1.3 2,913,713 - barA b2786 0.23 +0.9 2,913,713 - barA b2786 0.23 -0.3 2,913,720 - barA b2786 0.23 +0.9 2,913,721 - barA b2786 0.23 -1.3 2,913,721 - barA b2786 0.23 +0.6 2,913,739 + barA b2786 0.24 +0.7 2,913,739 + barA b2786 0.24 -0.4 2,913,739 + barA b2786 0.24 +1.5 2,913,744 - barA b2786 0.24 +0.8 2,913,744 - barA b2786 0.24 +0.7 2,913,747 - barA b2786 0.24 +0.2 2,913,747 - barA b2786 0.24 +2.0 2,913,747 - barA b2786 0.24 -0.8 2,913,766 - barA b2786 0.25 -0.4 2,913,782 - barA b2786 0.25 -0.2 2,913,813 + barA b2786 0.27 +1.2 2,913,836 - barA b2786 0.27 +2.5 2,913,836 - barA b2786 0.27 +0.2 2,913,848 + barA b2786 0.28 -0.6 2,913,848 + barA b2786 0.28 -0.2 2,913,848 + barA b2786 0.28 +1.7 2,913,848 + barA b2786 0.28 +1.2 2,913,858 + barA b2786 0.28 +0.8 2,913,858 + barA b2786 0.28 -1.1 2,913,863 + barA b2786 0.28 +0.3 2,913,863 + barA b2786 0.28 +2.0 2,913,910 + barA b2786 0.30 +1.0 2,913,910 + barA b2786 0.30 +0.5 2,913,933 + barA b2786 0.31 -0.1 2,913,933 + barA b2786 0.31 +1.2 2,913,935 + barA b2786 0.31 -0.6 2,913,935 + barA b2786 0.31 +0.6 2,913,983 - barA b2786 0.33 -0.0 2,913,984 - barA b2786 0.33 -1.8 2,913,985 + barA b2786 0.33 +0.2 2,913,987 + barA b2786 0.33 -1.4 2,913,990 + barA b2786 0.33 -1.1 2,913,990 + barA b2786 0.33 +2.0 2,913,990 + barA b2786 0.33 +0.6 2,913,990 + barA b2786 0.33 +1.5 2,913,990 + barA b2786 0.33 +1.2 2,913,990 + barA b2786 0.33 -0.2 2,913,997 + barA b2786 0.33 -2.2 2,913,997 - barA b2786 0.33 -1.0 2,913,998 - barA b2786 0.33 +0.0 2,913,998 - barA b2786 0.33 +1.1 2,913,999 + barA b2786 0.33 +0.3 2,914,000 - barA b2786 0.33 +1.8 2,914,000 - barA b2786 0.33 +1.2 2,914,000 - barA b2786 0.33 -0.2 2,914,000 - barA b2786 0.33 +0.1 2,914,002 + barA b2786 0.33 +1.0 2,914,002 + barA b2786 0.33 -1.4 2,914,002 + barA b2786 0.33 -1.7 2,914,002 + barA b2786 0.33 +1.0 2,914,005 - barA b2786 0.34 +0.5 2,914,017 - barA b2786 0.34 -1.7 2,914,017 - barA b2786 0.34 +2.0 2,914,017 - barA b2786 0.34 -1.8 2,914,018 - barA b2786 0.34 -0.2 2,914,018 - barA b2786 0.34 +1.2 2,914,019 - barA b2786 0.34 +0.2
Or see this region's nucleotide sequence