Strain Fitness in Escherichia coli BW25113 around b2142
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
2,228,138 | + | dusC | b2140 | 0.72 | +1.5 |
2,228,327 | - | -1.4 | |||
2,228,444 | - | +0.4 | |||
2,228,444 | - | -0.1 | |||
2,228,446 | - | +3.0 | |||
2,228,446 | - | -0.6 | |||
2,228,530 | - | +0.6 | |||
2,228,542 | - | +0.9 | |||
2,228,542 | - | +1.8 | |||
2,228,637 | - | +2.3 | |||
2,228,637 | - | +0.5 | |||
2,228,716 | - | yohJ | b2141 | 0.18 | -1.6 |
2,228,716 | - | yohJ | b2141 | 0.18 | -1.6 |
2,228,753 | + | yohJ | b2141 | 0.27 | -2.1 |
2,228,753 | + | yohJ | b2141 | 0.27 | -0.1 |
2,228,951 | + | yohJ | b2141 | 0.76 | -0.3 |
2,229,015 | + | -2.1 | |||
2,229,068 | - | +0.5 | |||
2,229,123 | - | yohK | b2142 | 0.12 | +1.4 |
2,229,123 | - | yohK | b2142 | 0.12 | -0.5 |
2,229,123 | - | yohK | b2142 | 0.12 | -1.9 |
2,229,123 | - | yohK | b2142 | 0.12 | +1.8 |
2,229,190 | + | yohK | b2142 | 0.21 | +1.9 |
2,229,221 | + | yohK | b2142 | 0.26 | -0.6 |
2,229,221 | + | yohK | b2142 | 0.26 | +1.0 |
2,229,259 | + | yohK | b2142 | 0.31 | +0.5 |
2,229,272 | - | yohK | b2142 | 0.33 | +0.6 |
2,229,279 | + | yohK | b2142 | 0.34 | +1.5 |
2,229,279 | + | yohK | b2142 | 0.34 | -3.0 |
2,229,284 | + | yohK | b2142 | 0.35 | +0.1 |
2,229,284 | + | yohK | b2142 | 0.35 | -0.1 |
2,229,292 | - | yohK | b2142 | 0.36 | +0.9 |
2,229,525 | + | yohK | b2142 | 0.70 | +3.2 |
2,229,580 | + | yohK | b2142 | 0.77 | -2.6 |
2,229,588 | - | yohK | b2142 | 0.79 | +0.1 |
2,229,672 | - | +1.9 | |||
2,229,728 | - | -1.4 | |||
2,229,728 | - | -2.4 | |||
2,229,972 | - | cdd | b2143 | 0.12 | -0.8 |
2,229,972 | - | cdd | b2143 | 0.12 | +0.3 |
2,229,984 | - | cdd | b2143 | 0.13 | +1.4 |
2,230,246 | + | cdd | b2143 | 0.43 | +1.5 |
2,230,255 | - | cdd | b2143 | 0.44 | -0.4 |
2,230,398 | - | cdd | b2143 | 0.60 | +1.9 |
2,230,398 | - | cdd | b2143 | 0.60 | -0.6 |
2,230,624 | - | cdd | b2143 | 0.86 | -0.5 |
2,230,685 | + | -1.9 | |||
2,230,685 | + | +3.3 |
Or see this region's nucleotide sequence