Strain Fitness in Escherichia coli BW25113 around b1818

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmanX and manY are separated by 62 nucleotidesmanY and manZ are separated by 12 nucleotidesmanZ and yobD are separated by 54 nucleotides b1817: manX - fused mannose-specific PTS enzymes: IIA component/IIB component (NCBI), at 1,900,072 to 1,901,043 manX b1818: manY - mannose-specific enzyme IIC component of PTS (NCBI), at 1,901,106 to 1,901,906 manY b1819: manZ - mannose-specific enzyme IID component of PTS (NCBI), at 1,901,919 to 1,902,770 manZ b1820: yobD - hypothetical protein (NCBI), at 1,902,825 to 1,903,283 yobD Position (kb) 1901 1902Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1900.112 kb on - strandat 1900.117 kb on - strandat 1900.225 kb on + strand, within manXat 1900.253 kb on - strand, within manXat 1900.413 kb on + strand, within manXat 1900.611 kb on + strand, within manXat 1900.651 kb on - strand, within manXat 1900.702 kb on + strand, within manXat 1900.730 kb on + strand, within manXat 1900.787 kb on + strand, within manXat 1900.864 kb on - strand, within manXat 1900.885 kb on - strand, within manXat 1900.885 kb on - strand, within manXat 1900.887 kb on + strand, within manXat 1900.887 kb on + strand, within manXat 1900.964 kb on + strandat 1900.972 kb on - strandat 1901.109 kb on - strandat 1901.109 kb on - strandat 1901.147 kb on + strandat 1901.150 kb on - strandat 1901.150 kb on - strandat 1901.406 kb on + strand, within manYat 1901.560 kb on - strand, within manYat 1901.794 kb on - strand, within manYat 1902.131 kb on + strand, within manZat 1902.131 kb on + strand, within manZat 1902.139 kb on - strand, within manZat 1902.139 kb on - strand, within manZat 1902.146 kb on + strand, within manZat 1902.425 kb on - strand, within manZat 1902.428 kb on + strand, within manZat 1902.618 kb on + strand, within manZat 1902.618 kb on + strand, within manZat 1902.626 kb on - strand, within manZat 1902.758 kb on + strandat 1902.763 kb on + strandat 1902.765 kb on + strandat 1902.765 kb on - strandat 1902.766 kb on - strandat 1902.773 kb on - strandat 1902.781 kb on - strandat 1902.867 kb on + strandat 1902.867 kb on + strandat 1902.875 kb on - strand, within yobDat 1902.875 kb on - strandat 1902.875 kb on - strand, within yobDat 1902.882 kb on + strand, within yobDat 1902.893 kb on + strand, within yobD

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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1,900,112 - +0.6
1,900,117 - +0.8
1,900,225 + manX b1817 0.16 +2.3
1,900,253 - manX b1817 0.19 +0.3
1,900,413 + manX b1817 0.35 +2.5
1,900,611 + manX b1817 0.55 +0.6
1,900,651 - manX b1817 0.60 +0.9
1,900,702 + manX b1817 0.65 +1.9
1,900,730 + manX b1817 0.68 +0.3
1,900,787 + manX b1817 0.74 +1.0
1,900,864 - manX b1817 0.81 +0.9
1,900,885 - manX b1817 0.84 +2.1
1,900,885 - manX b1817 0.84 +1.7
1,900,887 + manX b1817 0.84 +0.5
1,900,887 + manX b1817 0.84 +0.1
1,900,964 + +2.5
1,900,972 - +1.6
1,901,109 - +1.4
1,901,109 - +0.7
1,901,147 + +2.4
1,901,150 - +2.0
1,901,150 - +0.4
1,901,406 + manY b1818 0.37 -1.9
1,901,560 - manY b1818 0.57 +1.8
1,901,794 - manY b1818 0.86 +0.7
1,902,131 + manZ b1819 0.25 -0.7
1,902,131 + manZ b1819 0.25 +3.2
1,902,139 - manZ b1819 0.26 -0.4
1,902,139 - manZ b1819 0.26 +3.2
1,902,146 + manZ b1819 0.27 +0.6
1,902,425 - manZ b1819 0.59 +1.0
1,902,428 + manZ b1819 0.60 +1.3
1,902,618 + manZ b1819 0.82 -1.4
1,902,618 + manZ b1819 0.82 +3.1
1,902,626 - manZ b1819 0.83 +2.0
1,902,758 + -0.4
1,902,763 + -0.3
1,902,765 + +0.9
1,902,765 - +1.0
1,902,766 - +0.9
1,902,773 - +0.8
1,902,781 - -0.7
1,902,867 + -0.4
1,902,867 + -0.1
1,902,875 - yobD b1820 0.11 +0.4
1,902,875 - +0.9
1,902,875 - yobD b1820 0.11 +0.5
1,902,882 + yobD b1820 0.12 +0.3
1,902,893 + yobD b1820 0.15 -0.6

Or see this region's nucleotide sequence