Strain Fitness in Escherichia coli BW25113 around b1818
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
1,900,112 | - | +0.6 | |||
1,900,117 | - | +0.8 | |||
1,900,225 | + | manX | b1817 | 0.16 | +2.3 |
1,900,253 | - | manX | b1817 | 0.19 | +0.3 |
1,900,413 | + | manX | b1817 | 0.35 | +2.5 |
1,900,611 | + | manX | b1817 | 0.55 | +0.6 |
1,900,651 | - | manX | b1817 | 0.60 | +0.9 |
1,900,702 | + | manX | b1817 | 0.65 | +1.9 |
1,900,730 | + | manX | b1817 | 0.68 | +0.3 |
1,900,787 | + | manX | b1817 | 0.74 | +1.0 |
1,900,864 | - | manX | b1817 | 0.81 | +0.9 |
1,900,885 | - | manX | b1817 | 0.84 | +2.1 |
1,900,885 | - | manX | b1817 | 0.84 | +1.7 |
1,900,887 | + | manX | b1817 | 0.84 | +0.5 |
1,900,887 | + | manX | b1817 | 0.84 | +0.1 |
1,900,964 | + | +2.5 | |||
1,900,972 | - | +1.6 | |||
1,901,109 | - | +1.4 | |||
1,901,109 | - | +0.7 | |||
1,901,147 | + | +2.4 | |||
1,901,150 | - | +2.0 | |||
1,901,150 | - | +0.4 | |||
1,901,406 | + | manY | b1818 | 0.37 | -1.9 |
1,901,560 | - | manY | b1818 | 0.57 | +1.8 |
1,901,794 | - | manY | b1818 | 0.86 | +0.7 |
1,902,131 | + | manZ | b1819 | 0.25 | -0.7 |
1,902,131 | + | manZ | b1819 | 0.25 | +3.2 |
1,902,139 | - | manZ | b1819 | 0.26 | -0.4 |
1,902,139 | - | manZ | b1819 | 0.26 | +3.2 |
1,902,146 | + | manZ | b1819 | 0.27 | +0.6 |
1,902,425 | - | manZ | b1819 | 0.59 | +1.0 |
1,902,428 | + | manZ | b1819 | 0.60 | +1.3 |
1,902,618 | + | manZ | b1819 | 0.82 | -1.4 |
1,902,618 | + | manZ | b1819 | 0.82 | +3.1 |
1,902,626 | - | manZ | b1819 | 0.83 | +2.0 |
1,902,758 | + | -0.4 | |||
1,902,763 | + | -0.3 | |||
1,902,765 | + | +0.9 | |||
1,902,765 | - | +1.0 | |||
1,902,766 | - | +0.9 | |||
1,902,773 | - | +0.8 | |||
1,902,781 | - | -0.7 | |||
1,902,867 | + | -0.4 | |||
1,902,867 | + | -0.1 | |||
1,902,875 | - | yobD | b1820 | 0.11 | +0.4 |
1,902,875 | - | +0.9 | |||
1,902,875 | - | yobD | b1820 | 0.11 | +0.5 |
1,902,882 | + | yobD | b1820 | 0.12 | +0.3 |
1,902,893 | + | yobD | b1820 | 0.15 | -0.6 |
Or see this region's nucleotide sequence