Strain Fitness in Escherichia coli BW25113 around b1680
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
1,756,445 | - | ynhG | b1678 | 0.70 | +0.3 |
1,756,470 | + | ynhG | b1678 | 0.72 | +0.2 |
1,756,612 | + | ynhG | b1678 | 0.86 | -1.0 |
1,756,620 | - | ynhG | b1678 | 0.87 | +0.4 |
1,756,620 | - | ynhG | b1678 | 0.87 | +0.1 |
1,756,800 | + | +0.9 | |||
1,756,942 | + | sufE | b1679 | 0.11 | -1.5 |
1,756,962 | - | sufE | b1679 | 0.15 | +0.4 |
1,756,962 | - | sufE | b1679 | 0.15 | +0.2 |
1,757,135 | + | sufE | b1679 | 0.57 | -0.3 |
1,757,374 | - | -0.7 | |||
1,757,385 | - | +0.3 | |||
1,757,459 | + | sufS | b1680 | 0.11 | +0.5 |
1,757,486 | - | sufS | b1680 | 0.13 | +0.9 |
1,757,561 | - | sufS | b1680 | 0.19 | +0.8 |
1,757,561 | - | sufS | b1680 | 0.19 | -1.2 |
1,757,579 | + | sufS | b1680 | 0.21 | +0.1 |
1,757,579 | + | sufS | b1680 | 0.21 | -0.2 |
1,757,646 | + | sufS | b1680 | 0.26 | +0.2 |
1,757,646 | + | sufS | b1680 | 0.26 | -0.2 |
1,757,680 | - | sufS | b1680 | 0.29 | +0.5 |
1,757,680 | - | sufS | b1680 | 0.29 | +1.5 |
1,757,706 | + | sufS | b1680 | 0.31 | +1.2 |
1,757,706 | + | sufS | b1680 | 0.31 | +0.2 |
1,757,765 | - | sufS | b1680 | 0.36 | +1.1 |
1,757,775 | - | sufS | b1680 | 0.37 | +0.1 |
1,757,775 | - | sufS | b1680 | 0.37 | +0.7 |
1,758,135 | - | sufS | b1680 | 0.66 | +0.1 |
1,758,135 | - | sufS | b1680 | 0.66 | +0.6 |
1,758,168 | + | sufS | b1680 | 0.69 | -0.2 |
1,758,607 | + | +1.5 | |||
1,758,670 | - | +0.6 | |||
1,758,690 | + | sufD | b1681 | 0.11 | +0.2 |
1,758,690 | + | sufD | b1681 | 0.11 | -0.3 |
1,758,821 | - | sufD | b1681 | 0.22 | +0.1 |
1,759,046 | - | sufD | b1681 | 0.39 | +0.8 |
1,759,046 | - | sufD | b1681 | 0.39 | -0.2 |
1,759,054 | + | sufD | b1681 | 0.40 | -1.5 |
1,759,134 | + | sufD | b1681 | 0.46 | +0.8 |
1,759,288 | + | sufD | b1681 | 0.58 | -1.3 |
1,759,296 | - | sufD | b1681 | 0.59 | -1.1 |
1,759,345 | - | sufD | b1681 | 0.63 | -0.6 |
Or see this region's nucleotide sequence