Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paaH and paaI overlap by 11 nucleotides paaI and paaJ overlap by 1 nucleotides paaJ and paaK are separated by 26 nucleotides
b1395: paaH - 3-hydroxybutyryl-CoA dehydrogenase (NCBI), at 1,457,078 to 1,458,505
paaH
b1396: paaI - predicted thioesterase (NCBI), at 1,458,495 to 1,458,917
paaI
b1397: paaJ - acetyl-CoA acetyltransferase (NCBI), at 1,458,917 to 1,460,122
paaJ
b1398: paaK - phenylacetyl-CoA ligase (NCBI), at 1,460,149 to 1,461,462
paaK
Position (kb)
1458
1459
1460
1461 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1457.921 kb on - strand, within paaH at 1457.921 kb on - strand, within paaH at 1457.941 kb on + strand, within paaH at 1457.979 kb on + strand, within paaH at 1458.061 kb on - strand, within paaH at 1458.061 kb on - strand, within paaH at 1458.104 kb on - strand, within paaH at 1458.104 kb on - strand, within paaH at 1458.138 kb on + strand, within paaH at 1458.207 kb on + strand, within paaH at 1458.487 kb on - strand at 1458.499 kb on + strand at 1458.558 kb on - strand, within paaI at 1458.590 kb on - strand, within paaI at 1458.590 kb on - strand, within paaI at 1458.602 kb on + strand, within paaI at 1458.602 kb on + strand, within paaI at 1458.679 kb on - strand, within paaI at 1458.689 kb on - strand, within paaI at 1458.786 kb on + strand, within paaI at 1458.909 kb on - strand at 1458.909 kb on - strand at 1458.914 kb on - strand at 1458.914 kb on - strand at 1459.088 kb on + strand, within paaJ at 1459.188 kb on + strand, within paaJ at 1459.188 kb on + strand, within paaJ at 1459.425 kb on + strand, within paaJ at 1459.425 kb on + strand, within paaJ at 1459.608 kb on + strand, within paaJ at 1459.647 kb on + strand at 1459.698 kb on + strand, within paaJ at 1459.778 kb on - strand, within paaJ at 1459.803 kb on + strand, within paaJ at 1459.882 kb on + strand, within paaJ at 1459.898 kb on + strand, within paaJ at 1459.916 kb on - strand, within paaJ at 1459.976 kb on + strand, within paaJ at 1460.080 kb on - strand at 1460.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM remove 1,457,921 - paaH b1395 0.59 +0.7 1,457,921 - paaH b1395 0.59 +0.7 1,457,941 + paaH b1395 0.60 -0.2 1,457,979 + paaH b1395 0.63 +2.1 1,458,061 - paaH b1395 0.69 +0.4 1,458,061 - paaH b1395 0.69 -0.0 1,458,104 - paaH b1395 0.72 -1.0 1,458,104 - paaH b1395 0.72 -2.1 1,458,138 + paaH b1395 0.74 +1.7 1,458,207 + paaH b1395 0.79 -1.0 1,458,487 - +0.5 1,458,499 + +0.2 1,458,558 - paaI b1396 0.15 -1.6 1,458,590 - paaI b1396 0.22 +0.7 1,458,590 - paaI b1396 0.22 -1.1 1,458,602 + paaI b1396 0.25 +1.1 1,458,602 + paaI b1396 0.25 -0.9 1,458,679 - paaI b1396 0.43 -1.6 1,458,689 - paaI b1396 0.46 -0.4 1,458,786 + paaI b1396 0.69 -0.3 1,458,909 - +1.3 1,458,909 - -0.3 1,458,914 - +0.2 1,458,914 - -0.6 1,459,088 + paaJ b1397 0.14 -0.1 1,459,188 + paaJ b1397 0.22 -0.6 1,459,188 + paaJ b1397 0.22 +0.7 1,459,425 + paaJ b1397 0.42 +1.3 1,459,425 + paaJ b1397 0.42 -0.4 1,459,608 + paaJ b1397 0.57 -1.1 1,459,647 + +0.7 1,459,698 + paaJ b1397 0.65 -0.1 1,459,778 - paaJ b1397 0.71 -1.1 1,459,803 + paaJ b1397 0.73 +0.5 1,459,882 + paaJ b1397 0.80 -0.3 1,459,898 + paaJ b1397 0.81 +2.0 1,459,916 - paaJ b1397 0.83 -1.4 1,459,976 + paaJ b1397 0.88 -2.9 1,460,080 - -0.6 1,460,092 + +1.1
Or see this region's nucleotide sequence