Strain Fitness in Escherichia coli BW25113 around b1343
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
1,406,622 | + | ydaN | b1342 | 0.56 | -0.3 |
1,406,678 | - | ydaN | b1342 | 0.61 | -0.4 |
1,406,727 | + | ydaN | b1342 | 0.66 | +0.7 |
1,406,727 | + | ydaN | b1342 | 0.66 | -1.3 |
1,406,783 | + | ydaN | b1342 | 0.72 | +1.1 |
1,406,812 | - | ydaN | b1342 | 0.75 | +0.6 |
1,406,814 | - | ydaN | b1342 | 0.75 | +0.5 |
1,406,822 | - | ydaN | b1342 | 0.76 | +1.1 |
1,406,876 | + | ydaN | b1342 | 0.82 | +0.2 |
1,406,879 | - | ydaN | b1342 | 0.82 | -0.3 |
1,406,879 | - | ydaN | b1342 | 0.82 | -0.6 |
1,407,150 | - | -1.8 | |||
1,407,225 | - | fnrS | b4699 | 0.59 | -0.7 |
1,407,299 | - | -0.2 | |||
1,407,384 | + | -0.1 | |||
1,407,384 | + | -0.4 | |||
1,407,421 | + | -2.1 | |||
1,407,429 | - | +1.7 | |||
1,407,799 | + | dbpA | b1343 | 0.19 | -0.8 |
1,408,018 | + | dbpA | b1343 | 0.35 | -1.6 |
1,408,018 | + | dbpA | b1343 | 0.35 | -1.5 |
1,408,236 | + | dbpA | b1343 | 0.51 | +1.3 |
1,408,267 | - | dbpA | b1343 | 0.53 | -3.0 |
1,408,317 | + | dbpA | b1343 | 0.57 | +0.7 |
1,408,317 | + | dbpA | b1343 | 0.57 | -0.3 |
1,408,531 | - | dbpA | b1343 | 0.72 | -1.0 |
1,408,598 | - | dbpA | b1343 | 0.77 | -1.3 |
1,408,740 | - | dbpA | b1343 | 0.88 | -0.3 |
1,408,740 | - | dbpA | b1343 | 0.88 | +0.7 |
1,409,313 | + | ydaO | b1344 | 0.29 | +0.7 |
1,409,443 | + | ydaO | b1344 | 0.43 | -0.8 |
1,409,571 | + | ydaO | b1344 | 0.57 | -2.4 |
1,409,591 | + | ydaO | b1344 | 0.59 | +0.5 |
1,409,678 | - | ydaO | b1344 | 0.68 | +2.9 |
Or see this region's nucleotide sequence