Strain Fitness in Escherichia coli BW25113 around b0934

Experiment: Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpepN and ssuB are separated by 42 nucleotidesssuB and ycbM overlap by 4 nucleotidesycbM and ssuD are separated by 10 nucleotides b0932: pepN - aminopeptidase N (NCBI), at 989,845 to 992,457 pepN b0933: ssuB - alkanesulfonate transporter subunit (NCBI), at 992,500 to 993,267 ssuB b0934: ycbM - putative transport system permease protein (VIMSS), at 993,264 to 994,055 ycbM b0935: ssuD - alkanesulfonate monooxygenase (NCBI), at 994,066 to 995,211 ssuD Position (kb) 993 994 995Strain fitness (log2 ratio) -2 -1 0 1 2at 992.402 kb on - strandat 992.438 kb on + strandat 992.582 kb on - strand, within ssuBat 992.676 kb on + strand, within ssuBat 992.681 kb on + strand, within ssuBat 992.712 kb on + strand, within ssuBat 992.928 kb on - strand, within ssuBat 993.003 kb on + strand, within ssuBat 993.003 kb on + strand, within ssuBat 993.056 kb on - strand, within ssuBat 993.078 kb on - strand, within ssuBat 993.103 kb on + strand, within ssuBat 993.239 kb on - strandat 993.526 kb on + strand, within ycbMat 993.729 kb on - strand, within ycbMat 993.913 kb on + strand, within ycbMat 994.024 kb on + strandat 994.033 kb on - strandat 994.089 kb on + strandat 994.089 kb on + strandat 994.335 kb on - strand, within ssuDat 994.356 kb on + strand, within ssuDat 994.364 kb on - strand, within ssuDat 994.597 kb on - strand, within ssuDat 994.710 kb on - strand, within ssuDat 994.710 kb on - strand, within ssuDat 994.723 kb on + strand, within ssuDat 994.869 kb on + strand, within ssuDat 994.869 kb on - strand, within ssuDat 994.900 kb on - strand, within ssuDat 994.900 kb on - strand, within ssuDat 994.962 kb on + strand, within ssuDat 995.043 kb on - strand, within ssuD

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 5 mM
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992,402 - +1.2
992,438 + +0.1
992,582 - ssuB b0933 0.11 +1.9
992,676 + ssuB b0933 0.23 -0.8
992,681 + ssuB b0933 0.24 -0.5
992,712 + ssuB b0933 0.28 -0.5
992,928 - ssuB b0933 0.56 +0.1
993,003 + ssuB b0933 0.65 +0.1
993,003 + ssuB b0933 0.65 +0.2
993,056 - ssuB b0933 0.72 -0.8
993,078 - ssuB b0933 0.75 -1.3
993,103 + ssuB b0933 0.79 +0.3
993,239 - -0.1
993,526 + ycbM b0934 0.33 +0.4
993,729 - ycbM b0934 0.59 +0.8
993,913 + ycbM b0934 0.82 -0.0
994,024 + -0.1
994,033 - +0.7
994,089 + +0.2
994,089 + +0.1
994,335 - ssuD b0935 0.23 +0.7
994,356 + ssuD b0935 0.25 -1.3
994,364 - ssuD b0935 0.26 -0.6
994,597 - ssuD b0935 0.46 -1.2
994,710 - ssuD b0935 0.56 -0.1
994,710 - ssuD b0935 0.56 -1.9
994,723 + ssuD b0935 0.57 +2.1
994,869 + ssuD b0935 0.70 -0.7
994,869 - ssuD b0935 0.70 +0.5
994,900 - ssuD b0935 0.73 +2.3
994,900 - ssuD b0935 0.73 +0.5
994,962 + ssuD b0935 0.78 -0.3
995,043 - ssuD b0935 0.85 -1.5

Or see this region's nucleotide sequence