Strain Fitness in Escherichia coli BW25113 around b0934
Experiment: Aluminum chloride 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 5 mM |
---|---|---|---|---|---|
remove | |||||
992,402 | - | +1.2 | |||
992,438 | + | +0.1 | |||
992,582 | - | ssuB | b0933 | 0.11 | +1.9 |
992,676 | + | ssuB | b0933 | 0.23 | -0.8 |
992,681 | + | ssuB | b0933 | 0.24 | -0.5 |
992,712 | + | ssuB | b0933 | 0.28 | -0.5 |
992,928 | - | ssuB | b0933 | 0.56 | +0.1 |
993,003 | + | ssuB | b0933 | 0.65 | +0.1 |
993,003 | + | ssuB | b0933 | 0.65 | +0.2 |
993,056 | - | ssuB | b0933 | 0.72 | -0.8 |
993,078 | - | ssuB | b0933 | 0.75 | -1.3 |
993,103 | + | ssuB | b0933 | 0.79 | +0.3 |
993,239 | - | -0.1 | |||
993,526 | + | ycbM | b0934 | 0.33 | +0.4 |
993,729 | - | ycbM | b0934 | 0.59 | +0.8 |
993,913 | + | ycbM | b0934 | 0.82 | -0.0 |
994,024 | + | -0.1 | |||
994,033 | - | +0.7 | |||
994,089 | + | +0.2 | |||
994,089 | + | +0.1 | |||
994,335 | - | ssuD | b0935 | 0.23 | +0.7 |
994,356 | + | ssuD | b0935 | 0.25 | -1.3 |
994,364 | - | ssuD | b0935 | 0.26 | -0.6 |
994,597 | - | ssuD | b0935 | 0.46 | -1.2 |
994,710 | - | ssuD | b0935 | 0.56 | -0.1 |
994,710 | - | ssuD | b0935 | 0.56 | -1.9 |
994,723 | + | ssuD | b0935 | 0.57 | +2.1 |
994,869 | + | ssuD | b0935 | 0.70 | -0.7 |
994,869 | - | ssuD | b0935 | 0.70 | +0.5 |
994,900 | - | ssuD | b0935 | 0.73 | +2.3 |
994,900 | - | ssuD | b0935 | 0.73 | +0.5 |
994,962 | + | ssuD | b0935 | 0.78 | -0.3 |
995,043 | - | ssuD | b0935 | 0.85 | -1.5 |
Or see this region's nucleotide sequence