Strain Fitness in Pseudomonas sp. RS175 around PFR28_02764

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
3,235,728	+				-0.8
3,235,800	+				-0.6
3,235,800	+				-1.3
3,235,800	+				+0.4
3,235,800	+				-1.9
3,235,800	+				+0.6
3,235,801	-				+0.1
3,235,801	-				+0.4
3,235,801	-				+0.2
3,235,860	+				-0.0
3,235,861	-				+0.5
3,235,960	+				-0.5
3,235,961	-				+0.2
3,235,992	+				-2.5
3,235,992	+				-0.8
3,235,992	+				-0.2
3,235,993	-				-0.7
3,235,993	-				-0.7
3,235,995	+				-2.6
3,235,995	+				+0.5
3,235,995	+				-1.0
3,235,995	+				-0.7
3,235,995	+				-1.5
3,235,996	-				-0.2
3,235,996	-				-0.1
3,235,996	-				-1.9
3,236,030	+				-1.3
3,236,030	+				+2.1
3,236,030	+				-0.1
3,236,031	-				+0.1
3,236,031	-				+0.7
3,236,034	+				-2.4
3,236,067	+				+1.0
3,236,068	-				+0.3
3,236,068	-				-1.1
3,236,080	+				+0.9
3,236,082	+				-0.2
3,236,094	+				+0.5
3,236,095	-				-0.0
3,236,113	+				-0.3
3,236,114	-				-2.4
3,236,119	+				+0.1
3,236,119	+				+1.4
3,236,120	-				+2.0
3,236,126	+				-0.3
3,236,126	+				+1.5
3,236,126	+				-0.3
3,236,126	+				+0.3
3,236,126	+				+0.3
3,236,127	-				+1.4
3,236,127	-				-0.8
3,236,174	+				-0.0
3,236,174	+				-2.2
3,236,174	+				-0.1
3,236,343	+				-0.7
3,236,355	+				+0.0
3,236,355	+				-0.9
3,236,355	+				+0.4
3,236,355	+				-0.1
3,236,356	-				-0.8
3,236,356	-				-0.8
3,236,356	-				+0.1
3,236,356	-				-0.4
3,236,356	-				-1.8
3,236,549	-		PFR28_02763	0.74	+0.5
3,236,638	+				-0.1
3,236,638	+				+0.1
3,236,638	+				-1.9
3,236,638	+				+0.9
3,236,638	+				-0.6
3,236,638	+				-0.9
3,236,638	+				-2.5
3,236,638	+				+0.8
3,236,638	+				-0.3
3,236,638	+				+0.6
3,236,638	+				+0.4
3,236,638	+				-2.1
3,236,639	-				-0.3
3,236,639	-				+0.2
3,236,639	-				-1.5
3,236,639	-				+0.2
3,236,639	-				+0.6
3,236,639	-				+1.3
3,236,639	-				+0.3
3,236,639	-				-0.0
3,236,639	-				+0.1
3,236,643	+				+0.1
3,236,643	+				-0.1
3,236,643	+				-0.1
3,236,643	+				-1.1
3,236,643	+				-0.0
3,236,644	-				-2.5
3,236,644	-				-1.1
3,236,644	-				+0.1
3,236,644	-				-0.2
3,236,644	-				-0.5
3,236,644	-				+1.3
3,236,644	-				-0.7
3,236,701	+				+0.8
3,236,702	-				-0.5
3,236,749	+				+0.3
3,236,950	+		PFR28_02764	0.25	+0.8
3,237,154	+		PFR28_02764	0.44	+0.8
3,237,154	+		PFR28_02764	0.44	-0.8
3,237,154	+		PFR28_02764	0.44	-0.3
3,237,154	+		PFR28_02764	0.44	-0.2
3,237,157	+		PFR28_02764	0.45	+0.3
3,237,157	+		PFR28_02764	0.45	-1.3
3,237,158	-		PFR28_02764	0.45	-3.0
3,237,158	-		PFR28_02764	0.45	+1.0
3,237,160	+		PFR28_02764	0.45	+0.6
3,237,160	+		PFR28_02764	0.45	+0.3
3,237,160	+		PFR28_02764	0.45	+1.9
3,237,160	+		PFR28_02764	0.45	+0.5
3,237,160	+		PFR28_02764	0.45	+1.8
3,237,160	+		PFR28_02764	0.45	+3.0
3,237,161	-		PFR28_02764	0.45	+0.9
3,237,161	-		PFR28_02764	0.45	-0.7
3,237,161	-		PFR28_02764	0.45	-0.5
3,237,247	+		PFR28_02764	0.53	-0.4
3,237,247	+		PFR28_02764	0.53	+1.0
3,237,248	-		PFR28_02764	0.53	+1.1
3,237,248	-		PFR28_02764	0.53	+0.5
3,237,562	+		PFR28_02764	0.82	+0.6
3,237,562	+		PFR28_02764	0.82	-0.5
3,237,562	+		PFR28_02764	0.82	+1.1
3,237,563	-		PFR28_02764	0.83	+0.5
3,237,563	-		PFR28_02764	0.83	-0.0
3,237,563	-		PFR28_02764	0.83	+1.2
3,237,563	-		PFR28_02764	0.83	+0.7
3,237,801	+				-0.1
3,237,801	+				+0.3
3,237,802	-				+1.5
3,237,802	-				-0.5
3,237,810	+				+0.8
3,237,885	-				+2.3
3,237,885	-				-0.4
3,237,885	-				+0.0
3,237,885	-				+0.9
3,238,355	+		PFR28_02765	0.25	-0.1
3,238,355	+		PFR28_02765	0.25	-0.4
3,238,355	+		PFR28_02765	0.25	-1.7
3,238,355	+		PFR28_02765	0.25	+1.3
3,238,355	+		PFR28_02765	0.25	-0.5
3,238,355	+		PFR28_02765	0.25	+0.0
3,238,355	+		PFR28_02765	0.25	-0.2
3,238,355	+		PFR28_02765	0.25	-0.5
3,238,355	+		PFR28_02765	0.25	+0.4
3,238,356	-		PFR28_02765	0.25	+2.1
3,238,356	-		PFR28_02765	0.25	-2.9
3,238,356	-		PFR28_02765	0.25	-0.3
3,238,356	-		PFR28_02765	0.25	+0.5
3,238,356	-		PFR28_02765	0.25	-0.4
3,238,356	-		PFR28_02765	0.25	-0.0
3,238,356	-		PFR28_02765	0.25	-0.2
3,238,377	+		PFR28_02765	0.25	+1.0
3,238,377	+		PFR28_02765	0.25	+3.8
3,238,386	+		PFR28_02765	0.26	+0.5
3,238,386	+		PFR28_02765	0.26	+0.2
3,238,386	+		PFR28_02765	0.26	+0.9
3,238,386	+		PFR28_02765	0.26	-0.6
3,238,386	+		PFR28_02765	0.26	+1.3
3,238,386	+		PFR28_02765	0.26	-2.4
3,238,387	-		PFR28_02765	0.26	+0.1
3,238,387	-		PFR28_02765	0.26	-1.8
3,238,387	-		PFR28_02765	0.26	-1.0
3,238,592	-		PFR28_02765	0.34	+0.7
3,238,716	+		PFR28_02765	0.39	+2.2
3,238,716	+		PFR28_02765	0.39	+0.9
3,238,716	+		PFR28_02765	0.39	+2.2
3,238,716	+		PFR28_02765	0.39	+0.9
3,238,716	+		PFR28_02765	0.39	+0.0
3,238,716	+		PFR28_02765	0.39	-0.4
3,238,716	+		PFR28_02765	0.39	+2.9
3,238,717	-		PFR28_02765	0.39	-0.1
3,238,717	-		PFR28_02765	0.39	-0.3
3,238,717	-		PFR28_02765	0.39	-0.2
3,238,717	-		PFR28_02765	0.39	-2.2
3,238,717	-		PFR28_02765	0.39	-1.2
3,238,717	-		PFR28_02765	0.39	+0.2
3,238,717	-		PFR28_02765	0.39	-1.9
3,238,717	-		PFR28_02765	0.39	+0.3
3,238,717	-		PFR28_02765	0.39	+0.1