Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3339 and Atu3340 overlap by 4 nucleotides Atu3340 and Atu3341 are separated by 10 nucleotides
Atu3339: Atu3339 - trehalose/maltose ABC transporter permease, at 373,807 to 374,781
Atu3339
Atu3340: Atu3340 - trehalose/maltose ABC transporter permease, at 374,778 to 375,611
Atu3340
Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650
Atu3341
Position (kb) 374
375
376 Strain fitness (log2 ratio) -1
0
1
2 at 373.822 kb on + strand at 373.962 kb on - strand, within Atu3339 at 374.032 kb on - strand, within Atu3339 at 374.032 kb on - strand, within Atu3339 at 374.032 kb on - strand, within Atu3339 at 374.096 kb on + strand, within Atu3339 at 374.221 kb on - strand, within Atu3339 at 374.254 kb on + strand, within Atu3339 at 374.262 kb on - strand, within Atu3339 at 374.286 kb on + strand, within Atu3339 at 374.315 kb on + strand, within Atu3339 at 374.467 kb on - strand, within Atu3339 at 374.492 kb on - strand, within Atu3339 at 374.572 kb on - strand, within Atu3339 at 374.592 kb on + strand, within Atu3339 at 374.622 kb on + strand, within Atu3339 at 374.622 kb on + strand, within Atu3339 at 374.630 kb on - strand, within Atu3339 at 374.630 kb on - strand, within Atu3339 at 374.774 kb on + strand at 374.818 kb on + strand at 374.868 kb on + strand, within Atu3340 at 374.868 kb on + strand, within Atu3340 at 375.057 kb on - strand, within Atu3340 at 375.103 kb on - strand, within Atu3340 at 375.232 kb on - strand, within Atu3340 at 375.301 kb on + strand, within Atu3340 at 375.309 kb on - strand, within Atu3340 at 375.316 kb on - strand, within Atu3340 at 375.347 kb on - strand, within Atu3340 at 375.364 kb on + strand, within Atu3340 at 375.364 kb on + strand, within Atu3340 at 375.372 kb on - strand, within Atu3340 at 375.372 kb on - strand, within Atu3340 at 375.426 kb on - strand, within Atu3340 at 375.577 kb on + strand at 375.577 kb on + strand at 375.626 kb on + strand at 375.665 kb on + strand at 375.665 kb on + strand at 375.756 kb on + strand, within Atu3341 at 375.885 kb on + strand, within Atu3341 at 375.981 kb on - strand, within Atu3341 at 375.987 kb on + strand, within Atu3341 at 375.998 kb on + strand, within Atu3341 at 376.006 kb on - strand, within Atu3341 at 376.073 kb on + strand, within Atu3341 at 376.081 kb on - strand, within Atu3341 at 376.201 kb on + strand, within Atu3341 at 376.203 kb on - strand, within Atu3341 at 376.206 kb on + strand, within Atu3341 at 376.230 kb on + strand, within Atu3341
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 373,822 + -0.3 373,962 - Atu3339 0.16 -0.0 374,032 - Atu3339 0.23 +0.1 374,032 - Atu3339 0.23 +0.5 374,032 - Atu3339 0.23 +0.1 374,096 + Atu3339 0.30 +0.6 374,221 - Atu3339 0.42 +0.2 374,254 + Atu3339 0.46 +1.1 374,262 - Atu3339 0.47 +0.9 374,286 + Atu3339 0.49 -1.1 374,315 + Atu3339 0.52 -0.4 374,467 - Atu3339 0.68 +2.5 374,492 - Atu3339 0.70 +0.2 374,572 - Atu3339 0.78 -0.5 374,592 + Atu3339 0.81 -0.4 374,622 + Atu3339 0.84 +0.0 374,622 + Atu3339 0.84 +1.2 374,630 - Atu3339 0.84 -0.5 374,630 - Atu3339 0.84 +0.6 374,774 + -0.8 374,818 + -0.1 374,868 + Atu3340 0.11 -0.4 374,868 + Atu3340 0.11 +0.0 375,057 - Atu3340 0.33 +0.5 375,103 - Atu3340 0.39 +0.1 375,232 - Atu3340 0.54 -0.6 375,301 + Atu3340 0.63 +0.1 375,309 - Atu3340 0.64 +0.5 375,316 - Atu3340 0.65 -0.6 375,347 - Atu3340 0.68 +0.3 375,364 + Atu3340 0.70 -0.8 375,364 + Atu3340 0.70 +0.4 375,372 - Atu3340 0.71 +0.5 375,372 - Atu3340 0.71 -0.5 375,426 - Atu3340 0.78 -0.3 375,577 + -0.8 375,577 + -0.2 375,626 + +0.1 375,665 + -0.5 375,665 + +0.2 375,756 + Atu3341 0.13 +0.2 375,885 + Atu3341 0.26 -0.1 375,981 - Atu3341 0.35 -0.0 375,987 + Atu3341 0.35 -0.3 375,998 + Atu3341 0.37 -0.1 376,006 - Atu3341 0.37 +0.3 376,073 + Atu3341 0.44 +0.3 376,081 - Atu3341 0.45 +0.2 376,201 + Atu3341 0.56 +0.3 376,203 - Atu3341 0.56 +0.1 376,206 + Atu3341 0.57 +1.0 376,230 + Atu3341 0.59 -0.4
Or see this region's nucleotide sequence