Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3129 and Atu3130 are separated by 112 nucleotides Atu3130 and Atu3131 are separated by 43 nucleotides
Atu3129: Atu3129 - polygalacturonase-like protein, at 136,093 to 137,646
Atu3129
Atu3130: Atu3130 - sugar ABC transporter substrate-binding protein, at 137,759 to 139,027
Atu3130
Atu3131: Atu3131 - sugar ABC transporter ATPase, at 139,071 to 140,171
Atu3131
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -2
-1
0
1 at 136.825 kb on - strand, within Atu3129 at 136.869 kb on - strand, within Atu3129 at 136.970 kb on - strand, within Atu3129 at 137.045 kb on - strand, within Atu3129 at 137.196 kb on + strand, within Atu3129 at 137.215 kb on - strand, within Atu3129 at 137.239 kb on - strand, within Atu3129 at 137.400 kb on + strand, within Atu3129 at 137.408 kb on - strand, within Atu3129 at 137.434 kb on + strand, within Atu3129 at 137.442 kb on - strand, within Atu3129 at 137.601 kb on + strand at 137.601 kb on + strand at 137.642 kb on + strand at 137.702 kb on - strand at 137.830 kb on + strand at 137.969 kb on - strand, within Atu3130 at 137.985 kb on + strand, within Atu3130 at 138.081 kb on - strand, within Atu3130 at 138.253 kb on + strand, within Atu3130 at 138.261 kb on - strand, within Atu3130 at 138.338 kb on - strand, within Atu3130 at 138.368 kb on - strand, within Atu3130 at 138.488 kb on + strand, within Atu3130 at 138.493 kb on - strand, within Atu3130 at 138.642 kb on + strand, within Atu3130 at 138.720 kb on - strand, within Atu3130 at 138.853 kb on - strand, within Atu3130 at 138.938 kb on + strand at 139.306 kb on - strand, within Atu3131 at 139.358 kb on + strand, within Atu3131 at 139.386 kb on + strand, within Atu3131 at 139.406 kb on - strand, within Atu3131 at 139.462 kb on + strand, within Atu3131 at 139.512 kb on - strand, within Atu3131 at 139.583 kb on - strand, within Atu3131 at 139.634 kb on + strand, within Atu3131 at 139.692 kb on - strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.734 kb on + strand, within Atu3131 at 139.762 kb on + strand, within Atu3131 at 139.997 kb on - strand, within Atu3131 at 140.017 kb on - strand, within Atu3131
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 136,825 - Atu3129 0.47 +0.4 136,869 - Atu3129 0.50 -0.0 136,970 - Atu3129 0.56 +0.9 137,045 - Atu3129 0.61 +0.6 137,196 + Atu3129 0.71 -0.3 137,215 - Atu3129 0.72 +0.0 137,239 - Atu3129 0.74 +0.0 137,400 + Atu3129 0.84 +0.1 137,408 - Atu3129 0.85 -0.6 137,434 + Atu3129 0.86 -0.0 137,442 - Atu3129 0.87 +0.7 137,601 + +0.2 137,601 + -0.5 137,642 + +1.1 137,702 - -0.5 137,830 + +0.1 137,969 - Atu3130 0.17 +0.1 137,985 + Atu3130 0.18 -0.5 138,081 - Atu3130 0.25 -0.4 138,253 + Atu3130 0.39 +1.2 138,261 - Atu3130 0.40 -0.1 138,338 - Atu3130 0.46 -0.9 138,368 - Atu3130 0.48 -0.0 138,488 + Atu3130 0.57 +0.1 138,493 - Atu3130 0.58 +0.0 138,642 + Atu3130 0.70 -0.1 138,720 - Atu3130 0.76 -0.0 138,853 - Atu3130 0.86 -0.3 138,938 + -0.0 139,306 - Atu3131 0.21 -0.6 139,358 + Atu3131 0.26 +0.1 139,386 + Atu3131 0.29 +1.6 139,406 - Atu3131 0.30 -1.8 139,462 + Atu3131 0.36 +0.0 139,512 - Atu3131 0.40 +0.1 139,583 - Atu3131 0.47 -0.4 139,634 + Atu3131 0.51 +0.3 139,692 - Atu3131 0.56 +0.1 139,734 + Atu3131 0.60 +0.1 139,734 + Atu3131 0.60 -0.3 139,762 + Atu3131 0.63 -0.3 139,997 - Atu3131 0.84 +0.2 140,017 - Atu3131 0.86 +0.2
Or see this region's nucleotide sequence