Strain Fitness in Agrobacterium fabrum C58 around Atu0983

Experiment: D-Galacturonic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0982 and Atu0983 are separated by 226 nucleotidesAtu0983 and Atu0984 are separated by 136 nucleotides Atu0982: Atu0982 - two component sensor kinase, at 974,550 to 976,886 Atu0982 Atu0983: Atu0983 - hypothetical protein, at 977,113 to 977,433 Atu0983 Atu0984: Atu0984 - aminopeptidase N, at 977,570 to 980,218 Atu0984 Position (kb) 977 978Strain fitness (log2 ratio) -1 0 1 2at 976.752 kb on - strandat 976.752 kb on - strandat 976.752 kb on - strandat 976.998 kb on + strandat 977.032 kb on + strandat 977.085 kb on + strandat 977.085 kb on + strandat 977.085 kb on + strandat 977.130 kb on - strandat 977.134 kb on - strandat 977.163 kb on - strand, within Atu0983at 977.291 kb on + strand, within Atu0983at 977.460 kb on + strandat 977.538 kb on + strandat 977.551 kb on - strandat 977.573 kb on + strandat 977.749 kb on - strandat 977.776 kb on - strandat 977.799 kb on + strandat 977.831 kb on - strandat 977.859 kb on - strand, within Atu0984at 978.032 kb on - strand, within Atu0984at 978.105 kb on - strand, within Atu0984at 978.280 kb on - strand, within Atu0984at 978.324 kb on + strand, within Atu0984at 978.418 kb on - strand, within Atu0984

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
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976,752 - -0.1
976,752 - -0.0
976,752 - -0.5
976,998 + +0.6
977,032 + +0.1
977,085 + -0.2
977,085 + -0.4
977,085 + +0.7
977,130 - -0.1
977,134 - -0.8
977,163 - Atu0983 0.16 +0.2
977,291 + Atu0983 0.55 -0.5
977,460 + +0.2
977,538 + +0.1
977,551 - +0.5
977,573 + -0.2
977,749 - +0.6
977,776 - +0.4
977,799 + +0.2
977,831 - +0.3
977,859 - Atu0984 0.11 -0.2
978,032 - Atu0984 0.17 +0.2
978,105 - Atu0984 0.20 -0.8
978,280 - Atu0984 0.27 +0.8
978,324 + Atu0984 0.28 +1.8
978,418 - Atu0984 0.32 +0.2

Or see this region's nucleotide sequence