Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22110

Experiment: 30_an_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22095 and AMB_RS22100 overlap by 1 nucleotidesAMB_RS22100 and AMB_RS22105 are separated by 20 nucleotidesAMB_RS22105 and AMB_RS22110 are separated by 45 nucleotidesAMB_RS22110 and AMB_RS22115 overlap by 4 nucleotidesAMB_RS22115 and AMB_RS22120 are separated by 125 nucleotides AMB_RS22095: AMB_RS22095 - cadmium-translocating P-type ATPase, at 4,771,367 to 4,773,715 _RS22095 AMB_RS22100: AMB_RS22100 - cbb3-type cytochrome oxidase assembly protein CcoS, at 4,773,715 to 4,773,876 _RS22100 AMB_RS22105: AMB_RS22105 - transcriptional regulator, at 4,773,897 to 4,774,640 _RS22105 AMB_RS22110: AMB_RS22110 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,774,686 to 4,775,510 _RS22110 AMB_RS22115: AMB_RS22115 - pantoate--beta-alanine ligase, at 4,775,507 to 4,776,361 _RS22115 AMB_RS22120: AMB_RS22120 - TldD/PmbA family protein, at 4,776,487 to 4,777,830 _RS22120 Position (kb) 4774 4775 4776Strain fitness (log2 ratio) -2 -1 0 1at 4773.912 kb on + strandat 4773.912 kb on + strandat 4773.912 kb on + strandat 4773.912 kb on + strandat 4774.039 kb on + strand, within AMB_RS22105at 4774.039 kb on + strand, within AMB_RS22105at 4774.039 kb on + strand, within AMB_RS22105at 4774.039 kb on + strand, within AMB_RS22105at 4774.039 kb on + strand, within AMB_RS22105at 4774.039 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.107 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.137 kb on + strand, within AMB_RS22105at 4774.221 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.227 kb on + strand, within AMB_RS22105at 4774.503 kb on + strand, within AMB_RS22105at 4774.503 kb on + strand, within AMB_RS22105at 4774.503 kb on + strand, within AMB_RS22105at 4774.503 kb on + strand, within AMB_RS22105at 4774.503 kb on + strand, within AMB_RS22105at 4774.503 kb on + strand, within AMB_RS22105at 4774.658 kb on - strandat 4776.360 kb on - strandat 4776.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_1
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4,773,912 + +0.1
4,773,912 + +0.5
4,773,912 + +0.1
4,773,912 + +0.0
4,774,039 + AMB_RS22105 0.19 -2.4
4,774,039 + AMB_RS22105 0.19 -0.1
4,774,039 + AMB_RS22105 0.19 +0.7
4,774,039 + AMB_RS22105 0.19 -0.9
4,774,039 + AMB_RS22105 0.19 -0.3
4,774,039 + AMB_RS22105 0.19 -2.7
4,774,107 + AMB_RS22105 0.28 -0.5
4,774,107 + AMB_RS22105 0.28 +0.5
4,774,107 + AMB_RS22105 0.28 -0.0
4,774,107 + AMB_RS22105 0.28 +0.7
4,774,107 + AMB_RS22105 0.28 -0.7
4,774,107 + AMB_RS22105 0.28 -1.3
4,774,107 + AMB_RS22105 0.28 -2.0
4,774,107 + AMB_RS22105 0.28 +0.3
4,774,137 + AMB_RS22105 0.32 +0.6
4,774,137 + AMB_RS22105 0.32 +0.1
4,774,137 + AMB_RS22105 0.32 +0.8
4,774,137 + AMB_RS22105 0.32 -0.7
4,774,137 + AMB_RS22105 0.32 +0.4
4,774,137 + AMB_RS22105 0.32 +0.2
4,774,137 + AMB_RS22105 0.32 +0.1
4,774,137 + AMB_RS22105 0.32 -0.1
4,774,137 + AMB_RS22105 0.32 -0.3
4,774,137 + AMB_RS22105 0.32 +0.7
4,774,137 + AMB_RS22105 0.32 +0.1
4,774,221 + AMB_RS22105 0.44 -0.7
4,774,227 + AMB_RS22105 0.44 +0.2
4,774,227 + AMB_RS22105 0.44 +0.4
4,774,227 + AMB_RS22105 0.44 +0.4
4,774,227 + AMB_RS22105 0.44 +0.1
4,774,227 + AMB_RS22105 0.44 -0.9
4,774,227 + AMB_RS22105 0.44 +0.4
4,774,227 + AMB_RS22105 0.44 +0.1
4,774,227 + AMB_RS22105 0.44 -0.2
4,774,227 + AMB_RS22105 0.44 +0.1
4,774,227 + AMB_RS22105 0.44 -2.0
4,774,227 + AMB_RS22105 0.44 +0.1
4,774,227 + AMB_RS22105 0.44 -1.5
4,774,227 + AMB_RS22105 0.44 -1.1
4,774,227 + AMB_RS22105 0.44 -0.1
4,774,227 + AMB_RS22105 0.44 +0.1
4,774,227 + AMB_RS22105 0.44 -0.3
4,774,227 + AMB_RS22105 0.44 -0.0
4,774,227 + AMB_RS22105 0.44 -1.8
4,774,503 + AMB_RS22105 0.81 -2.2
4,774,503 + AMB_RS22105 0.81 -0.2
4,774,503 + AMB_RS22105 0.81 -0.7
4,774,503 + AMB_RS22105 0.81 -0.0
4,774,503 + AMB_RS22105 0.81 -0.2
4,774,503 + AMB_RS22105 0.81 +0.5
4,774,658 - -2.1
4,776,360 - -0.7
4,776,488 + -1.5

Or see this region's nucleotide sequence